SMTL ID : 6t1b.1

Crystal structure of YlmD from Geobacillus stearothermophilus in complex with inosine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.20 Å

Oligo State

monomer

Ligands

1 x NOS: INOSINE(Non-covalent)

NOS.1: 18 residues within 4Å: Chain A: G.46, L.47, H.48, V.49, R.60, C.76, C.77, E.78, Q.79, H.81, F.100, C.122, F.123, A.124, C.126, H.143, R.263 Ligands: ZN.3 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:L.47, A:H.48, A:R.60, A:Q.79, A:Q.79, A:Q.79, A:C.122, A:H.143, A:R.263, A:R.263 Water bridges: A:A.124 pi-Stacking: A:F.100

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 6 residues within 4Å: Chain A: G.181, C.183, C.184, C.243, S.245, C.246 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.183, A:C.184, A:C.243, A:C.246 ZN.3: 4 residues within 4Å: Chain A: H.81, C.126, H.143 Ligands: NOS.1 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.81, A:C.126, A:H.143

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cader, M.Z. et al., FAMIN Is a Multifunctional Purine Enzyme Enabling the Purine Nucleotide Cycle. Cell (2020)

Release Date

2020-01-29

Peptides

YlmD: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

YlmD

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