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SMTL ID : 6t6g.2
(1 other biounit)
Bacteroides salyersiae GH164 beta-mannosidase in complex with noeuromycin
Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.06 Å
Oligo State
homo-trimer
Ligands
3 x
EDO
:
1,2-ETHANEDIOL
(Non-functional Binders)
EDO.1:
9 residues within 4Å:
Chain A:
E.151
,
H.225
,
N.226
,
S.249
,
H.251
,
W.254
,
H.255
,
E.288
Ligands:
MNM.2
2
PLIP interactions
:
2 interactions with chain A
Hydrogen bonds:
A:H.225
,
A:H.255
EDO.4:
8 residues within 4Å:
Chain B:
E.151
,
H.225
,
N.226
,
S.249
,
H.251
,
W.254
,
H.255
Ligands:
MNM.5
3
PLIP interactions
:
3 interactions with chain B
Hydrogen bonds:
B:E.151
,
B:H.225
,
B:H.255
EDO.7:
8 residues within 4Å:
Chain C:
E.151
,
H.225
,
N.226
,
S.249
,
H.251
,
W.254
,
H.255
Ligands:
MNM.8
3
PLIP interactions
:
3 interactions with chain C
Hydrogen bonds:
C:E.151
,
C:H.225
,
C:H.255
3 x
MNM
:
(2S,3S,4R,5R)-2,3,4-TRIHYDROXY-5-HYDROXYMETHYL-PIPERIDINE
(Non-covalent)
MNM.2:
15 residues within 4Å:
Chain A:
R.64
,
R.66
,
V.111
,
G.112
,
N.150
,
E.151
,
H.251
,
W.254
,
E.288
,
S.297
,
W.327
,
R.332
,
E.337
,
W.341
Ligands:
EDO.1
13
PLIP interactions
:
13 interactions with chain A
Hydrophobic interactions:
A:W.327
Hydrogen bonds:
A:R.66
,
A:R.66
,
A:V.111
,
A:N.150
,
A:E.151
,
A:H.251
,
A:W.254
,
A:R.332
,
A:R.332
,
A:E.337
Water bridges:
A:E.337
,
A:E.337
MNM.5:
14 residues within 4Å:
Chain B:
R.64
,
R.66
,
V.111
,
G.112
,
N.150
,
E.151
,
H.251
,
W.254
,
E.288
,
W.327
,
R.332
,
E.337
,
W.341
Ligands:
EDO.4
13
PLIP interactions
:
13 interactions with chain B
Hydrophobic interactions:
B:W.327
Hydrogen bonds:
B:R.66
,
B:R.66
,
B:V.111
,
B:N.150
,
B:E.151
,
B:H.251
,
B:W.254
,
B:R.332
,
B:R.332
,
B:E.337
Water bridges:
B:E.337
,
B:E.337
MNM.8:
14 residues within 4Å:
Chain C:
R.64
,
R.66
,
V.111
,
G.112
,
N.150
,
E.151
,
H.251
,
W.254
,
E.288
,
W.327
,
R.332
,
E.337
,
W.341
Ligands:
EDO.7
13
PLIP interactions
:
13 interactions with chain C
Hydrophobic interactions:
C:W.327
Hydrogen bonds:
C:R.66
,
C:R.66
,
C:V.111
,
C:N.150
,
C:E.151
,
C:H.251
,
C:W.254
,
C:R.332
,
C:R.332
,
C:E.337
Water bridges:
C:W.327
,
C:E.337
3 x
CL
:
CHLORIDE ION
(Non-functional Binders)
CL.3:
5 residues within 4Å:
Chain A:
Q.36
,
R.64
,
R.66
,
T.101
,
W.327
Ligand excluded by PLIP
CL.6:
5 residues within 4Å:
Chain B:
Q.36
,
R.64
,
R.66
,
T.101
,
W.327
Ligand excluded by PLIP
CL.9:
5 residues within 4Å:
Chain C:
Q.36
,
R.64
,
R.66
,
T.101
,
W.327
Ligand excluded by PLIP
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Armstrong, Z. et al., Structure and function ofBs164 beta-mannosidase fromBacteroides salyersiaethe founding member of glycoside hydrolase family GH164. J.Biol.Chem. (2020)
Release Date
2020-01-01
Peptides
Glyco_hydro_42M domain-containing protein:
A
B
C
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
DDD
B
FFF
C
EEE
Export Alignment
FASTA format
Clustal Format
PNG Image
Secondary Structure
None
DSSP
PSIPRED
SSpro
Colour Scheme
Fade Mismatches
Enhance Mismatches
Chain
Unique Chain
Rainbow
2° Structure
Bfactor
Bfactor Range
SOA
Entropy
Clustal
Hydrophobic
Size
Charged
Polar
Proline
Ser/Thr
Cysteine
Aliphatic
Aromatic
No Colour
Background
3D Viewer
NGL
PV
2D
FASTA
Multi FASTA
ClustalW
PNG
Glyco_hydro_42M domain-containing protein
Related Entries With Identical Sequence
6t5o.1
|
6t5o.2
|
6t6g.1
|
6t75.1
|
6t75.2
|
6t7g.1
|
6t7g.2
|
7omi.1
|
7omi.2
|
7oms.1
|
7oms.2
Cartoon
Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog
Background
Transparent
Resolution
Low
Medium
High
Extreme