SMTL ID : 6t8g.1

Stalled FtsK motor domain bound to dsDNA

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

homo-hexamer

Ligands

6 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 11 residues within 4Å: Chain A: T.222, T.223, G.224, S.225, G.226, K.227, S.228, V.229, Q.386, H.430, F.450 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:G.224, A:G.226, A:S.228, A:S.228, A:S.228, A:Q.386 Salt bridges: A:K.255 pi-Stacking: A:F.450 ADP.2: 11 residues within 4Å: Chain B: M.175, T.222, T.223, S.225, G.226, K.227, S.228, V.229, Q.386, H.430, F.450 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:G.226, B:S.228, B:S.228, B:S.228, B:V.229, B:Q.386, B:Q.386 Salt bridges: B:K.227, B:K.255 ADP.3: 10 residues within 4Å: Chain C: T.223, G.224, S.225, G.226, K.227, S.228, Q.386, H.430, G.431, F.450 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:K.227, C:S.228, C:Q.386, C:Q.386 ADP.4: 11 residues within 4Å: Chain D: T.223, G.224, S.225, G.226, K.227, S.228, V.229, Q.386, H.430, G.431, F.450 7 PLIP interactions: 7 interactions with chain D Hydrogen bonds: D:G.224, D:G.226, D:K.227, D:S.228, D:S.228, D:V.229, D:Q.386 ADP.5: 11 residues within 4Å: Chain E: M.175, T.223, G.224, S.225, G.226, K.227, S.228, V.229, Q.386, H.430, F.450 8 PLIP interactions: 8 interactions with chain E Hydrogen bonds: E:G.224, E:S.225, E:G.226, E:K.227, E:S.228, E:S.228, E:V.229, E:Q.386 ADP.6: 12 residues within 4Å: Chain F: R.173, M.175, T.223, G.224, S.225, G.226, K.227, S.228, V.229, H.430, G.448, F.450 9 PLIP interactions: 9 interactions with chain F Hydrogen bonds: F:R.173, F:G.224, F:G.226, F:K.227, F:S.228, F:S.228, F:V.229, F:H.430, F:G.448

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jean, N.L. et al., FtsK in motion reveals its mechanism for double-stranded DNA translocation. Proc.Natl.Acad.Sci.USA (2020)

Release Date

2019-11-20

Peptides

DNA translocase FtsK: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

DNA translocase FtsK

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