- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.70 Å
- Oligo State
- homo-octamer
- Ligands
- 16 x NAG- FUC: alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 8 x NAG- NAG- TGY: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[1-deoxy-alpha-D-tagatopyranose-(2-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
NAG-NAG-TGY.3: 4 residues within 4Å:- Chain A: G.336, S.338, N.341, N.342
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:G.336
NAG-NAG-TGY.13: 4 residues within 4Å:- Chain B: G.336, S.338, N.341, N.342
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:G.336
NAG-NAG-TGY.23: 4 residues within 4Å:- Chain C: G.336, S.338, N.341, N.342
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:G.336
NAG-NAG-TGY.33: 4 residues within 4Å:- Chain D: G.336, S.338, N.341, N.342
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:G.336
NAG-NAG-TGY.43: 4 residues within 4Å:- Chain E: G.336, S.338, N.341, N.342
1 PLIP interactions:1 interactions with chain E- Hydrogen bonds: E:G.336
NAG-NAG-TGY.53: 4 residues within 4Å:- Chain F: G.336, S.338, N.341, N.342
1 PLIP interactions:1 interactions with chain F- Hydrogen bonds: F:G.336
NAG-NAG-TGY.63: 4 residues within 4Å:- Chain G: G.336, S.338, N.341, N.342
1 PLIP interactions:1 interactions with chain G- Hydrogen bonds: G:G.336
NAG-NAG-TGY.73: 4 residues within 4Å:- Chain H: G.336, S.338, N.341, N.342
1 PLIP interactions:1 interactions with chain H- Hydrogen bonds: H:G.336
- 8 x GOL: GLYCEROL(Non-functional Binders)
GOL.4: 6 residues within 4Å:- Chain A: W.231, T.234, R.242, L.286, S.287, V.288
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:W.231, A:R.242, A:R.242, A:L.286, A:V.288
GOL.14: 6 residues within 4Å:- Chain B: W.231, T.234, R.242, L.286, S.287, V.288
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:W.231, B:R.242, B:R.242, B:L.286, B:V.288
GOL.24: 6 residues within 4Å:- Chain C: W.231, T.234, R.242, L.286, S.287, V.288
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:W.231, C:R.242, C:R.242, C:L.286, C:V.288
GOL.34: 6 residues within 4Å:- Chain D: W.231, T.234, R.242, L.286, S.287, V.288
5 PLIP interactions:5 interactions with chain D- Hydrogen bonds: D:W.231, D:R.242, D:R.242, D:L.286, D:V.288
GOL.44: 6 residues within 4Å:- Chain E: W.231, T.234, R.242, L.286, S.287, V.288
5 PLIP interactions:5 interactions with chain E- Hydrogen bonds: E:W.231, E:R.242, E:R.242, E:L.286, E:V.288
GOL.54: 6 residues within 4Å:- Chain F: W.231, T.234, R.242, L.286, S.287, V.288
5 PLIP interactions:5 interactions with chain F- Hydrogen bonds: F:W.231, F:R.242, F:R.242, F:L.286, F:V.288
GOL.64: 6 residues within 4Å:- Chain G: W.231, T.234, R.242, L.286, S.287, V.288
5 PLIP interactions:5 interactions with chain G- Hydrogen bonds: G:W.231, G:R.242, G:R.242, G:L.286, G:V.288
GOL.74: 6 residues within 4Å:- Chain H: W.231, T.234, R.242, L.286, S.287, V.288
5 PLIP interactions:5 interactions with chain H- Hydrogen bonds: H:W.231, H:R.242, H:R.242, H:L.286, H:V.288
- 24 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.5: 2 residues within 4Å:- Chain A: N.106, N.188
Ligand excluded by PLIPNAG.6: 3 residues within 4Å:- Chain A: N.256, T.258, E.259
Ligand excluded by PLIPNAG.7: 3 residues within 4Å:- Chain A: R.465, E.482, N.485
Ligand excluded by PLIPNAG.15: 2 residues within 4Å:- Chain B: N.106, N.188
Ligand excluded by PLIPNAG.16: 3 residues within 4Å:- Chain B: N.256, T.258, E.259
Ligand excluded by PLIPNAG.17: 3 residues within 4Å:- Chain B: R.465, E.482, N.485
Ligand excluded by PLIPNAG.25: 2 residues within 4Å:- Chain C: N.106, N.188
Ligand excluded by PLIPNAG.26: 3 residues within 4Å:- Chain C: N.256, T.258, E.259
Ligand excluded by PLIPNAG.27: 3 residues within 4Å:- Chain C: R.465, E.482, N.485
Ligand excluded by PLIPNAG.35: 2 residues within 4Å:- Chain D: N.106, N.188
Ligand excluded by PLIPNAG.36: 3 residues within 4Å:- Chain D: N.256, T.258, E.259
Ligand excluded by PLIPNAG.37: 3 residues within 4Å:- Chain D: R.465, E.482, N.485
Ligand excluded by PLIPNAG.45: 2 residues within 4Å:- Chain E: N.106, N.188
Ligand excluded by PLIPNAG.46: 3 residues within 4Å:- Chain E: N.256, T.258, E.259
Ligand excluded by PLIPNAG.47: 3 residues within 4Å:- Chain E: R.465, E.482, N.485
Ligand excluded by PLIPNAG.55: 2 residues within 4Å:- Chain F: N.106, N.188
Ligand excluded by PLIPNAG.56: 3 residues within 4Å:- Chain F: N.256, T.258, E.259
Ligand excluded by PLIPNAG.57: 3 residues within 4Å:- Chain F: R.465, E.482, N.485
Ligand excluded by PLIPNAG.65: 2 residues within 4Å:- Chain G: N.106, N.188
Ligand excluded by PLIPNAG.66: 3 residues within 4Å:- Chain G: N.256, T.258, E.259
Ligand excluded by PLIPNAG.67: 3 residues within 4Å:- Chain G: R.465, E.482, N.485
Ligand excluded by PLIPNAG.75: 2 residues within 4Å:- Chain H: N.106, N.188
Ligand excluded by PLIPNAG.76: 3 residues within 4Å:- Chain H: N.256, T.258, E.259
Ligand excluded by PLIPNAG.77: 3 residues within 4Å:- Chain H: R.465, E.482, N.485
Ligand excluded by PLIP- 16 x SO4: SULFATE ION(Non-functional Binders)
SO4.8: 3 residues within 4Å:- Chain A: S.487, T.488, T.508
Ligand excluded by PLIPSO4.9: 4 residues within 4Å:- Chain A: Q.316, G.413, N.414, N.415
Ligand excluded by PLIPSO4.18: 3 residues within 4Å:- Chain B: S.487, T.488, T.508
Ligand excluded by PLIPSO4.19: 4 residues within 4Å:- Chain B: Q.316, G.413, N.414, N.415
Ligand excluded by PLIPSO4.28: 3 residues within 4Å:- Chain C: S.487, T.488, T.508
Ligand excluded by PLIPSO4.29: 4 residues within 4Å:- Chain C: Q.316, G.413, N.414, N.415
Ligand excluded by PLIPSO4.38: 3 residues within 4Å:- Chain D: S.487, T.488, T.508
Ligand excluded by PLIPSO4.39: 4 residues within 4Å:- Chain D: Q.316, G.413, N.414, N.415
Ligand excluded by PLIPSO4.48: 3 residues within 4Å:- Chain E: S.487, T.488, T.508
Ligand excluded by PLIPSO4.49: 4 residues within 4Å:- Chain E: Q.316, G.413, N.414, N.415
Ligand excluded by PLIPSO4.58: 3 residues within 4Å:- Chain F: S.487, T.488, T.508
Ligand excluded by PLIPSO4.59: 4 residues within 4Å:- Chain F: Q.316, G.413, N.414, N.415
Ligand excluded by PLIPSO4.68: 3 residues within 4Å:- Chain G: S.487, T.488, T.508
Ligand excluded by PLIPSO4.69: 4 residues within 4Å:- Chain G: Q.316, G.413, N.414, N.415
Ligand excluded by PLIPSO4.78: 3 residues within 4Å:- Chain H: S.487, T.488, T.508
Ligand excluded by PLIPSO4.79: 4 residues within 4Å:- Chain H: Q.316, G.413, N.414, N.415
Ligand excluded by PLIP- 8 x MXB: (R,E)-2-(hydroxyimino)-N-(3-(4-((2-methyl-1H-imidazol-1-yl)methyl)-1H-1,2,3-triazol-1-yl)-1-phenylpropyl)acetamide(Non-covalent)
MXB.10: 12 residues within 4Å:- Chain A: W.82, G.115, G.116, G.117, T.120, E.197, P.285, L.286, F.329, Y.332, H.438, G.439
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:T.120, A:Y.332
- Hydrogen bonds: A:P.285
- pi-Stacking: A:W.82
MXB.20: 12 residues within 4Å:- Chain B: W.82, G.115, G.116, G.117, T.120, E.197, P.285, L.286, F.329, Y.332, H.438, G.439
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:T.120, B:Y.332
- Hydrogen bonds: B:P.285
- pi-Stacking: B:W.82
MXB.30: 12 residues within 4Å:- Chain C: W.82, G.115, G.116, G.117, T.120, E.197, P.285, L.286, F.329, Y.332, H.438, G.439
4 PLIP interactions:4 interactions with chain C- Hydrophobic interactions: C:T.120, C:Y.332
- Hydrogen bonds: C:P.285
- pi-Stacking: C:W.82
MXB.40: 12 residues within 4Å:- Chain D: W.82, G.115, G.116, G.117, T.120, E.197, P.285, L.286, F.329, Y.332, H.438, G.439
4 PLIP interactions:4 interactions with chain D- Hydrophobic interactions: D:T.120, D:Y.332
- Hydrogen bonds: D:P.285
- pi-Stacking: D:W.82
MXB.50: 12 residues within 4Å:- Chain E: W.82, G.115, G.116, G.117, T.120, E.197, P.285, L.286, F.329, Y.332, H.438, G.439
6 PLIP interactions:6 interactions with chain E- Hydrophobic interactions: E:T.120, E:Y.332
- Hydrogen bonds: E:T.120, E:P.285
- Water bridges: E:Y.128
- pi-Stacking: E:W.82
MXB.60: 12 residues within 4Å:- Chain F: W.82, G.115, G.116, G.117, T.120, E.197, P.285, L.286, F.329, Y.332, H.438, G.439
6 PLIP interactions:6 interactions with chain F- Hydrophobic interactions: F:T.120, F:Y.332
- Hydrogen bonds: F:T.120, F:P.285
- Water bridges: F:Y.128
- pi-Stacking: F:W.82
MXB.70: 12 residues within 4Å:- Chain G: W.82, G.115, G.116, G.117, T.120, E.197, P.285, L.286, F.329, Y.332, H.438, G.439
6 PLIP interactions:6 interactions with chain G- Hydrophobic interactions: G:T.120, G:Y.332
- Hydrogen bonds: G:T.120, G:P.285
- Water bridges: G:Y.128
- pi-Stacking: G:W.82
MXB.80: 12 residues within 4Å:- Chain H: W.82, G.115, G.116, G.117, T.120, E.197, P.285, L.286, F.329, Y.332, H.438, G.439
6 PLIP interactions:6 interactions with chain H- Hydrophobic interactions: H:T.120, H:Y.332
- Hydrogen bonds: H:T.120, H:P.285
- Water bridges: H:Y.128
- pi-Stacking: H:W.82
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Marakovic, N. et al., Enantioseparation, in vitro testing, and structural characterization of triple-binding reactivators of organophosphate-inhibited cholinesterases. Biochem.J. (2020)
- Release Date
- 2020-07-15
- Peptides
- Cholinesterase: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
AG
AH
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.70 Å
- Oligo State
- homo-octamer
- Ligands
- 16 x NAG- FUC: alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 8 x NAG- NAG- TGY: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[1-deoxy-alpha-D-tagatopyranose-(2-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
- 8 x GOL: GLYCEROL(Non-functional Binders)
- 24 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 16 x SO4: SULFATE ION(Non-functional Binders)
- 8 x MXB: (R,E)-2-(hydroxyimino)-N-(3-(4-((2-methyl-1H-imidazol-1-yl)methyl)-1H-1,2,3-triazol-1-yl)-1-phenylpropyl)acetamide(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Marakovic, N. et al., Enantioseparation, in vitro testing, and structural characterization of triple-binding reactivators of organophosphate-inhibited cholinesterases. Biochem.J. (2020)
- Release Date
- 2020-07-15
- Peptides
- Cholinesterase: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
AG
AH
A