SMTL ID : 6tay.1

Mouse RNF213 mutant R4753K modeling the Moyamoya-disease-related Human variant R4810K

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 19 residues within 4Å: Chain A: A.1433, G.1434, V.1435, G.1436, K.1437, S.1438, L.1439, E.1537, A.1591, M.1592, D.1593, E.1596, F.1602, W.1650, S.1651, R.1654, K.1937, S.2012 Ligands: MG.2 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:G.1434, A:V.1435, A:G.1436, A:K.1437, A:S.1438, A:L.1439, A:A.1591, A:D.1593, A:E.1596 Salt bridges: A:K.1437, A:K.1437, A:K.1937 pi-Stacking: A:W.1650

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: S.1438, E.1537 Ligands: ATP.1 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:S.1438, A:E.1537

2 x ZN: ZINC ION(Non-covalent)

ZN.3: 4 residues within 4Å: Chain A: C.3439, H.3441, C.3459, C.3462 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.3439, A:H.3441, A:C.3459, A:C.3462 ZN.4: 4 residues within 4Å: Chain A: C.3424, C.3427, C.3444, C.3447 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.3424, A:C.3427, A:C.3444, A:C.3447

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ahel, J. et al., Moyamoya disease factor RNF213 is a giant E3 ligase with a dynein-like core and a distinct ubiquitin-transfer mechanism. Elife (2020)

Release Date

2020-07-01

Peptides

RNF213,E3 ubiquitin-protein ligase RNF213,E3 ubiquitin-protein ligase RNF213: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RNF213,E3 ubiquitin-protein ligase RNF213,E3 ubiquitin-protein ligase RNF213