SMTL ID : 6teg.1

Crystal structure of monooxygenase RutA complexed with uracil and dioxygen under 1.5 MPa / 15 bars of oxygen pressure.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.1: 19 residues within 4Å: Chain A: F.7, M.49, I.50, T.87, V.118, G.120, W.121, R.141, Y.142, A.188, G.189, Q.190, S.191, G.194, F.206, F.208, L.329 Ligands: URA.2, OXY.4 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:F.7, A:A.188, A:F.206, A:F.208, A:L.329 Hydrogen bonds: A:I.50, A:I.50, A:Y.142, A:Q.190, A:S.191 Water bridges: A:T.119, A:T.119, A:G.120, A:Y.142 Salt bridges: A:R.141 pi-Cation interactions: A:K.51

1 x URA: URACIL(Non-covalent)

URA.2: 8 residues within 4Å: Chain A: F.7, W.15, M.49, K.51, W.62, W.121, F.208 Ligands: FMN.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:W.15, A:K.51

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 3 residues within 4Å: Chain A: A.21, P.22, Q.23 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.23, A:Q.23

1 x OXY: OXYGEN MOLECULE(Non-covalent)

OXY.4: 7 residues within 4Å: Chain A: F.7, L.47, S.48, M.49, T.87, N.116 Ligands: FMN.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.116

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Matthews, A. et al., Aminoperoxide adducts expand the catalytic repertoire of flavin monooxygenases. Nat.Chem.Biol. (2020)

Release Date

2020-02-05

Peptides

Pyrimidine monooxygenase RutA: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

Pyrimidine monooxygenase RutA

Related Entries With Identical Sequence