SMTL ID : 6ten.1 (1 other biounit)

Crystal structure of Dot1L in complex with an inhibitor (compound 11).

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.21 Å

Oligo State

monomer

Ligands

1 x N5K: 3-[(4-azanyl-6-methoxy-1,3,5-triazin-2-yl)amino]-4-[[(~{S})-[2,2-bis(fluoranyl)-1,3-benzodioxol-4-yl]-(3-chloranylpyridin-2-yl)methyl]amino]benzenesulfonamide(Non-covalent)

N5K.1: 18 residues within 4Å: Chain A: E.130, P.131, F.132, S.141, L.144, V.145, M.148, V.170, F.240, V.241, N.242, F.244, V.268, S.269, S.270, V.311, S.312, Y.313 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:F.132, A:F.132, A:L.144, A:V.170, A:N.242, A:F.244, A:V.268 Hydrogen bonds: A:N.242, A:N.242, A:N.242, A:S.270, A:S.312, A:S.312 pi-Stacking: A:F.240, A:F.240, A:F.244 Halogen bonds: A:S.141

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: T.101, R.102, K.213 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.102 Water bridges: A:K.213, A:K.213 Salt bridges: A:R.102, A:K.213

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stauffer, F. et al., New Potent DOT1L Inhibitors forin VivoEvaluation in Mouse. Acs Med.Chem.Lett. (2019)

Release Date

2019-12-11

Peptides

Histone-lysine N-methyltransferase, H3 lysine-79 specific: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Histone-lysine N-methyltransferase, H3 lysine-79 specific

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