SMTL ID : 6teo.1 (1 other biounit)

Crystal structure of a yeast Snu114-Prp8 complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

hetero-1-1-mer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: Q.181, K.184, H.864 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.181 Salt bridges: A:K.184, A:H.864

1 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GTP.2: 22 residues within 4Å: Chain A: P.71, L.72, H.73, S.74, G.75, K.76, T.77, S.78, L.119, S.120, A.145, P.146, G.147, H.148, N.198, K.199, D.201, R.202, S.245, T.246, K.247 Ligands: MG.3 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:H.73, A:S.74, A:G.75, A:K.76, A:T.77, A:T.77, A:S.78, A:S.120, A:A.145, A:G.147, A:N.198, A:K.199, A:K.199, A:K.247 Water bridges: A:K.76 Salt bridges: A:H.73, A:K.76, A:K.76, A:D.201

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 5 residues within 4Å: Chain A: T.77, D.109, L.119, S.120 Ligands: GTP.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:T.77, A:D.109, A:S.120, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jia, J. et al., A Snu114-GTP-Prp8 module forms a relay station for efficient splicing in yeast. Nucleic Acids Res. (2020)

Release Date

2020-03-18

Peptides

Pre-mRNA-splicing factor SNU114: A
Pre-mRNA-splicing factor 8: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Pre-mRNA-splicing factor SNU114

Pre-mRNA-splicing factor 8

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