SMTL ID : 6thd.1 (3 other biounits)

Multiple Genomic RNA-Coat Protein Contacts Play Vital Roles in the Assembly of Infectious Enterovirus-E

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-mer

Ligands

2 x MYR: MYRISTIC ACID(Non-covalent)

MYR.1: 12 residues within 4Å: Chain A: I.97, D.98, F.99, R.100, F.121, Y.145, V.182, M.185, Y.191, N.215, M.220 Chain C: I.24 9 PLIP interactions: 1 interactions with chain C, 8 interactions with chain A Hydrophobic interactions: C:I.24, A:F.121, A:Y.145, A:Y.145, A:Y.145, A:V.182, A:Y.191 Hydrogen bonds: A:F.99 Salt bridges: A:R.100 MYR.4: 6 residues within 4Å: Chain D: G.1, N.9, Y.10, N.11, I.13, Y.15 4 PLIP interactions: 4 interactions with chain D Hydrophobic interactions: D:Y.10, D:N.11, D:I.13 Hydrogen bonds: D:G.1

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 6 residues within 4Å: Chain A: S.128, T.129, G.130, A.229, H.230, Q.231 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.130, A:A.229, A:Q.231 Salt bridges: A:H.230 SO4.3: 4 residues within 4Å: Chain B: A.85, N.88, G.146, S.147 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:N.88, B:N.88, B:S.147, B:S.147 Water bridges: B:N.87

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chandler-Bostock, R. et al., Assembly of infectious enteroviruses depends on multiple, conserved genomic RNA-coat protein contacts. Plos Pathog. (2020)

Release Date

2020-12-09

Peptides

Genome polyprotein: A
Genome polyprotein: B
Genome polyprotein: C
Genome polyprotein: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
1

B
2

C
3

D
4

Genome polyprotein

Genome polyprotein

Genome polyprotein

Genome polyprotein

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