- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.12 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x MN: MANGANESE (II) ION(Non-covalent)
- 4 x K: POTASSIUM ION(Non-covalent)
K.2: 7 residues within 4Å:- Chain A: W.169, A.222, S.223, M.225, E.233
- Ligands: MN.1, BYN.4
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:A.222, A:M.225, A:E.233
K.3: 4 residues within 4Å:- Chain A: R.421, D.427, D.459, L.461
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:R.421, A:D.427, A:D.459, A:L.461, H2O.10
K.8: 7 residues within 4Å:- Chain B: W.169, A.222, S.223, M.225, E.233
- Ligands: MN.7, BYN.10
3 PLIP interactions:3 interactions with chain B- Metal complexes: B:A.222, B:M.225, B:E.233
K.9: 4 residues within 4Å:- Chain B: R.421, D.427, D.459, L.461
5 PLIP interactions:4 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:R.421, B:D.427, B:D.459, B:L.461, H2O.36
- 2 x BYN: hydroxylated prenyl-FMN(Non-covalent)
BYN.4: 23 residues within 4Å:- Chain A: T.153, N.168, W.169, S.170, I.171, A.172, R.173, L.185, Q.190, H.191, S.223, S.224, M.225, P.226, E.233, C.316, E.322, T.323, I.327, K.391
- Ligands: MN.1, K.2, ICB.5
21 PLIP interactions:21 interactions with chain A- Hydrophobic interactions: A:I.171, A:I.171, A:R.173, A:I.327, A:I.327
- Hydrogen bonds: A:I.171, A:I.171, A:R.173, A:Q.190, A:H.191, A:S.224, A:M.225
- Water bridges: A:S.170, A:S.170, A:R.173, A:L.185, A:I.187, A:K.391, A:K.391
- Salt bridges: A:H.191, A:K.391
BYN.10: 23 residues within 4Å:- Chain B: T.153, N.168, W.169, S.170, I.171, A.172, R.173, L.185, Q.190, H.191, S.223, S.224, M.225, P.226, E.233, C.316, E.322, T.323, I.327, K.391
- Ligands: MN.7, K.8, ICB.11
21 PLIP interactions:21 interactions with chain B- Hydrophobic interactions: B:I.171, B:I.171, B:R.173, B:I.327, B:I.327
- Hydrogen bonds: B:I.171, B:I.171, B:R.173, B:Q.190, B:H.191, B:S.224, B:M.225
- Water bridges: B:S.170, B:S.170, B:R.173, B:L.185, B:I.187, B:K.391, B:K.391
- Salt bridges: B:H.191, B:K.391
- 4 x ICB: 1H-indole-2-carboxylic acid(Non-covalent)
ICB.5: 11 residues within 4Å:- Chain A: R.173, L.185, I.187, Q.190, F.280, E.282, M.283, Y.394, F.437, L.439
- Ligands: BYN.4
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:L.185, A:I.187, A:Y.394, A:L.439
- Hydrogen bonds: A:M.283
- Salt bridges: A:R.173
- pi-Stacking: A:F.437
ICB.6: 6 residues within 4Å:- Chain A: H.293, P.438, G.444, H.445, A.450, H.451
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:P.438
- Hydrogen bonds: A:G.444
- Water bridges: A:A.450
- Salt bridges: A:H.451
- pi-Stacking: A:H.293, A:H.293
ICB.11: 11 residues within 4Å:- Chain B: R.173, L.185, I.187, Q.190, F.280, E.282, M.283, Y.394, F.437, L.439
- Ligands: BYN.10
7 PLIP interactions:7 interactions with chain B- Hydrophobic interactions: B:L.185, B:I.187, B:Y.394, B:L.439
- Hydrogen bonds: B:M.283
- Salt bridges: B:R.173
- pi-Stacking: B:F.437
ICB.12: 6 residues within 4Å:- Chain B: H.293, P.438, G.444, H.445, A.450, H.451
6 PLIP interactions:6 interactions with chain B- Hydrophobic interactions: B:P.438
- Hydrogen bonds: B:G.444
- Water bridges: B:A.450
- Salt bridges: B:H.451
- pi-Stacking: B:H.293, B:H.293
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Aleku, G.A. et al., Enzymatic C-H activation of aromatic compounds through CO 2 fixation. Nat.Chem.Biol. (2020)
- Release Date
- 2020-06-24
- Peptides
- Ferulic acid decarboxylase 1: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AAAB
AAA
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.12 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x MN: MANGANESE (II) ION(Non-covalent)
- 4 x K: POTASSIUM ION(Non-covalent)
- 2 x BYN: hydroxylated prenyl-FMN(Non-covalent)
- 4 x ICB: 1H-indole-2-carboxylic acid(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Aleku, G.A. et al., Enzymatic C-H activation of aromatic compounds through CO 2 fixation. Nat.Chem.Biol. (2020)
- Release Date
- 2020-06-24
- Peptides
- Ferulic acid decarboxylase 1: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AAAB
AAA