SMTL ID : 6tm2.1

Human MUC2 AAs 21-1397

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-6-6-6-mer

Ligands

6 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain C: E.212, S.214, H.403, N.405 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 4 residues within 4Å: Chain D: E.212, S.214, H.403, N.405 No protein-ligand interaction detected (PLIP) NAG-NAG.17: 4 residues within 4Å: Chain I: E.212, S.214, H.403, N.405 No protein-ligand interaction detected (PLIP) NAG-NAG.18: 4 residues within 4Å: Chain J: E.212, S.214, H.403, N.405 No protein-ligand interaction detected (PLIP) NAG-NAG.33: 4 residues within 4Å: Chain O: E.212, S.214, H.403, N.405 No protein-ligand interaction detected (PLIP) NAG-NAG.34: 4 residues within 4Å: Chain P: E.212, S.214, H.403, N.405 No protein-ligand interaction detected (PLIP)

30 x CA: CALCIUM ION(Non-covalent)

CA.3: 6 residues within 4Å: Chain A: D.383, N.510, N.512, L.514, D.517, D.518 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:L.514, A:D.517, A:D.518 CA.4: 6 residues within 4Å: Chain A: D.29, D.151, N.153, L.155, S.159, E.160 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.151, A:L.155, A:E.160, A:E.160 CA.7: 6 residues within 4Å: Chain B: D.383, N.510, N.512, L.514, D.517, D.518 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:L.514, B:D.517, B:D.518 CA.8: 6 residues within 4Å: Chain B: D.29, D.151, N.153, L.155, S.159, E.160 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.151, B:L.155, B:E.160, B:E.160 CA.11: 6 residues within 4Å: Chain C: D.123, N.245, D.247, R.249, N.252, D.253 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:D.123, C:D.247, C:R.249, C:D.253 CA.12: 6 residues within 4Å: Chain D: D.123, N.245, D.247, R.249, N.252, D.253 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:D.123, D:D.247, D:R.249, D:D.253 CA.13: 6 residues within 4Å: Chain E: N.113, D.115, D.125, E.127, D.184, Y.185 5 PLIP interactions: 5 interactions with chain E Metal complexes: E:D.115, E:D.125, E:D.125, E:D.184, E:Y.185 CA.14: 6 residues within 4Å: Chain E: D.115, H.116, S.119, G.120, D.122, G.124 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:D.115, E:H.116, E:S.119, E:D.122 CA.15: 6 residues within 4Å: Chain F: N.113, D.115, D.125, E.127, D.184, Y.185 5 PLIP interactions: 5 interactions with chain F Metal complexes: F:D.115, F:D.125, F:D.125, F:D.184, F:Y.185 CA.16: 6 residues within 4Å: Chain F: D.115, H.116, S.119, G.120, D.122, G.124 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:D.115, F:H.116, F:S.119, F:D.122 CA.19: 6 residues within 4Å: Chain G: D.383, N.510, N.512, L.514, D.517, D.518 3 PLIP interactions: 3 interactions with chain G Metal complexes: G:L.514, G:D.517, G:D.518 CA.20: 6 residues within 4Å: Chain G: D.29, D.151, N.153, L.155, S.159, E.160 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:D.151, G:L.155, G:E.160, G:E.160 CA.23: 6 residues within 4Å: Chain H: D.383, N.510, N.512, L.514, D.517, D.518 3 PLIP interactions: 3 interactions with chain H Metal complexes: H:L.514, H:D.517, H:D.518 CA.24: 6 residues within 4Å: Chain H: D.29, D.151, N.153, L.155, S.159, E.160 4 PLIP interactions: 4 interactions with chain H Metal complexes: H:D.151, H:L.155, H:E.160, H:E.160 CA.27: 6 residues within 4Å: Chain I: D.123, N.245, D.247, R.249, N.252, D.253 4 PLIP interactions: 4 interactions with chain I Metal complexes: I:D.123, I:D.247, I:R.249, I:D.253 CA.28: 6 residues within 4Å: Chain J: D.123, N.245, D.247, R.249, N.252, D.253 4 PLIP interactions: 4 interactions with chain J Metal complexes: J:D.123, J:D.247, J:R.249, J:D.253 CA.29: 6 residues within 4Å: Chain K: N.113, D.115, D.125, E.127, D.184, Y.185 5 PLIP interactions: 5 interactions with chain K Metal complexes: K:D.115, K:D.125, K:D.125, K:D.184, K:Y.185 CA.30: 6 residues within 4Å: Chain K: D.115, H.116, S.119, G.120, D.122, G.124 4 PLIP interactions: 4 interactions with chain K Metal complexes: K:D.115, K:H.116, K:S.119, K:D.122 CA.31: 6 residues within 4Å: Chain L: N.113, D.115, D.125, E.127, D.184, Y.185 5 PLIP interactions: 5 interactions with chain L Metal complexes: L:D.115, L:D.125, L:D.125, L:D.184, L:Y.185 CA.32: 6 residues within 4Å: Chain L: D.115, H.116, S.119, G.120, D.122, G.124 4 PLIP interactions: 4 interactions with chain L Metal complexes: L:D.115, L:H.116, L:S.119, L:D.122 CA.35: 6 residues within 4Å: Chain M: D.383, N.510, N.512, L.514, D.517, D.518 3 PLIP interactions: 3 interactions with chain M Metal complexes: M:L.514, M:D.517, M:D.518 CA.36: 6 residues within 4Å: Chain M: D.29, D.151, N.153, L.155, S.159, E.160 4 PLIP interactions: 4 interactions with chain M Metal complexes: M:D.151, M:L.155, M:E.160, M:E.160 CA.39: 6 residues within 4Å: Chain N: D.383, N.510, N.512, L.514, D.517, D.518 3 PLIP interactions: 3 interactions with chain N Metal complexes: N:L.514, N:D.517, N:D.518 CA.40: 6 residues within 4Å: Chain N: D.29, D.151, N.153, L.155, S.159, E.160 4 PLIP interactions: 4 interactions with chain N Metal complexes: N:D.151, N:L.155, N:E.160, N:E.160 CA.43: 6 residues within 4Å: Chain O: D.123, N.245, D.247, R.249, N.252, D.253 4 PLIP interactions: 4 interactions with chain O Metal complexes: O:D.123, O:D.247, O:R.249, O:D.253 CA.44: 6 residues within 4Å: Chain P: D.123, N.245, D.247, R.249, N.252, D.253 4 PLIP interactions: 4 interactions with chain P Metal complexes: P:D.123, P:D.247, P:R.249, P:D.253 CA.45: 6 residues within 4Å: Chain Q: N.113, D.115, D.125, E.127, D.184, Y.185 5 PLIP interactions: 5 interactions with chain Q Metal complexes: Q:D.115, Q:D.125, Q:D.125, Q:D.184, Q:Y.185 CA.46: 6 residues within 4Å: Chain Q: D.115, H.116, S.119, G.120, D.122, G.124 4 PLIP interactions: 4 interactions with chain Q Metal complexes: Q:D.115, Q:H.116, Q:S.119, Q:D.122 CA.47: 6 residues within 4Å: Chain R: N.113, D.115, D.125, E.127, D.184, Y.185 5 PLIP interactions: 5 interactions with chain R Metal complexes: R:D.115, R:D.125, R:D.125, R:D.184, R:Y.185 CA.48: 6 residues within 4Å: Chain R: D.115, H.116, S.119, G.120, D.122, G.124 4 PLIP interactions: 4 interactions with chain R Metal complexes: R:D.115, R:H.116, R:S.119, R:D.122

12 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.5: 3 residues within 4Å: Chain A: R.142, N.143, N.153 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.142, A:N.143 NAG.6: 3 residues within 4Å: Chain A: W.627, N.650, D.682 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.682, A:D.682 NAG.9: 3 residues within 4Å: Chain B: R.142, N.143, N.153 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.142, B:N.143 NAG.10: 3 residues within 4Å: Chain B: W.627, N.650, D.682 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.682, B:D.682 NAG.21: 3 residues within 4Å: Chain G: R.142, N.143, N.153 2 PLIP interactions: 2 interactions with chain G Hydrogen bonds: G:R.142, G:N.143 NAG.22: 3 residues within 4Å: Chain G: W.627, N.650, D.682 3 PLIP interactions: 3 interactions with chain G Hydrogen bonds: G:D.682, G:D.682, G:D.682 NAG.25: 3 residues within 4Å: Chain H: R.142, N.143, N.153 2 PLIP interactions: 2 interactions with chain H Hydrogen bonds: H:R.142, H:N.143 NAG.26: 3 residues within 4Å: Chain H: W.627, N.650, D.682 3 PLIP interactions: 3 interactions with chain H Hydrogen bonds: H:D.682, H:D.682, H:D.682 NAG.37: 3 residues within 4Å: Chain M: R.142, N.143, N.153 2 PLIP interactions: 2 interactions with chain M Hydrogen bonds: M:R.142, M:N.143 NAG.38: 3 residues within 4Å: Chain M: W.627, N.650, D.682 3 PLIP interactions: 3 interactions with chain M Hydrogen bonds: M:D.682, M:D.682, M:D.682 NAG.41: 3 residues within 4Å: Chain N: R.142, N.143, N.153 2 PLIP interactions: 2 interactions with chain N Hydrogen bonds: N:R.142, N:N.143 NAG.42: 3 residues within 4Å: Chain N: W.627, N.650, D.682 3 PLIP interactions: 3 interactions with chain N Hydrogen bonds: N:D.682, N:D.682, N:D.682

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Javitt, G. et al., Assembly Mechanism of Mucin and von Willebrand Factor Polymers. Cell (2020)

Release Date

2020-10-21

Peptides

Mucin-2: ABGHMN
Mucin-2: CDIJOP
Mucin-2: EFKLQR

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

G
A

H
B

M
A

N
B

C
C

D
D

I
C

J
D

O
C

P
D

E
E

F
F

K
E

L
F

Q
E

R
F

Mucin-2

Mucin-2

Mucin-2