SMTL ID : 6tm8.1

Crystal structure of glycoprotein D of Equine Herpesvirus Type 4

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: T.136, D.137, L.221, Q.238, F.239 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.137, A:D.137, A:Q.238, A:F.239 Water bridges: A:D.138 GOL.2: 3 residues within 4Å: Chain A: V.44, K.45, I.46 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:I.46, A:I.46 Water bridges: A:K.45, A:K.45, A:K.45 GOL.3: 7 residues within 4Å: Chain A: T.131, T.132, S.146, L.181, F.183, F.228, D.231 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.131, A:S.146, A:S.146, A:D.231 GOL.4: 6 residues within 4Å: Chain A: R.21, V.69, D.70, L.113, F.114, D.138 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.21, A:F.114 Water bridges: A:T.67, A:D.70, A:D.70

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kremling, V. et al., Crystal structures of glycoprotein D of equine alphaherpesviruses reveal potential binding sites to the entry receptor MHC-I. Front Microbiol (2023)

Release Date

2020-11-11

Peptides

Envelope glycoprotein D: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Envelope glycoprotein D