SMTL ID : 6tyz.1

Structure of Ku80 von Willebrand domain complexed with APLF Ku Binding Motif

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.51 Å

Oligo State

hetero-1-1-mer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 6 residues within 4Å: Chain A: A.73, H.88, D.122, L.123, K.126, E.127 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.122 Water bridges: A:A.73, A:L.123 EDO.2: 6 residues within 4Å: Chain A: L.124, Q.125, T.128, L.136, A.163, I.165 1 PLIP interactions: 1 interactions with chain A Water bridges: A:Q.125

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, K. et al., Ligand binding characteristics of the Ku80 von Willebrand domain. DNA Repair (Amst.) (2019)

Release Date

2019-11-27

Peptides

X-ray repair cross-complementing protein 5: A
GLU-ARG-LYS-ARG-ILE-LEU-PRO-THR-TRP-MET-LEU-ALA: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

X-ray repair cross-complementing protein 5

GLU-ARG-LYS-ARG-ILE-LEU-PRO-THR-TRP-MET-LEU-ALA

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