SMTL ID : 6u3z.2 (1 other biounit)

Structure of VD20_5A4 Fab

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.99 Å

Oligo State

hetero-1-1-mer

Ligands

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 2 residues within 4Å: Chain A: V.129 Chain B: E.123 Ligand excluded by PLIP CL.2: 1 residues within 4Å: Chain A: R.98 Ligand excluded by PLIP CL.4: 2 residues within 4Å: Chain B: S.14, K.107 Ligand excluded by PLIP CL.5: 3 residues within 4Å: Chain B: D.30, S.67, G.68 Ligand excluded by PLIP

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 3 residues within 4Å: Chain A: R.67, S.85, T.87 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.87, A:T.87 GOL.7: 11 residues within 4Å: Chain A: F.174, P.175, V.177, S.185, L.186, S.187 Chain B: Q.160, S.162, S.176, S.177, T.178 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:S.162, B:S.177, B:T.178, A:S.187, A:S.187

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.6: 3 residues within 4Å: Chain A: S.140 Chain B: V.115, K.207 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:V.115 Salt bridges: B:K.207

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Phad, G.E. et al., Extensive dissemination and intraclonal maturation of HIV Env vaccine-induced B cell responses. J.Exp.Med. (2020)

Release Date

2019-11-20

Peptides

V20_5A4 Heavy Chain: A
V20_5A4 Light Chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

V20_5A4 Heavy Chain

V20_5A4 Light Chain

Related Entries With Identical Sequence