SMTL ID : 6u4b.1

WbbM bifunctional glycosytransferase apo structure

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-trimer

Ligands

6 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: N.585 Chain B: N.585 Chain C: N.585 Ligands: MG.3, MG.5 No protein-ligand interaction detected (PLIP) MG.2: 3 residues within 4Å: Chain A: D.406, D.408, H.560 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.406, A:D.408, A:D.408, A:H.560, H2O.7 MG.3: 5 residues within 4Å: Chain A: N.585 Chain B: N.585 Chain C: N.585 Ligands: MG.1, MG.5 No protein-ligand interaction detected (PLIP) MG.4: 3 residues within 4Å: Chain B: D.406, D.408, H.560 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.406, B:D.408, B:D.408, B:H.560, H2O.14 MG.5: 5 residues within 4Å: Chain A: N.585 Chain B: N.585 Chain C: N.585 Ligands: MG.1, MG.3 No protein-ligand interaction detected (PLIP) MG.6: 3 residues within 4Å: Chain C: D.406, D.408, H.560 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:D.406, C:D.408, C:D.408, C:H.560, H2O.21

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Clarke, B.R. et al., A bifunctional O-antigen polymerase structure reveals a new glycosyltransferase family. Nat.Chem.Biol. (2020)

Release Date

2020-01-22

Peptides

WbbM protein: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

WbbM protein