- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.98 Å
- Oligo State
- homo-tetramer
- Ligands
- 8 x ZN: ZINC ION(Non-covalent)
- 4 x LMP: (2~{S},3~{R},4~{S})-2-[(2~{S},3~{R})-1,3-bis(oxidanyl)-1-oxidanylidene-butan-2-yl]-4-[(3~{S},5~{S})-5-(dimethylcarbamoy l)pyrrolidin-3-yl]sulfanyl-3-methyl-3,4-dihydro-2~{H}-pyrrole-5-carboxylic acid(Non-covalent)
LMP.3: 18 residues within 4Å:- Chain A: Y.17, W.23, H.90, H.92, D.94, H.95, F.130, I.134, H.166, S.191, S.193, P.195, H.231, A.234, K.262
- Ligands: ZN.1, ZN.2, PGE.4
13 PLIP interactions:13 interactions with chain A- Hydrophobic interactions: A:F.130, A:I.134, A:P.195
- Hydrogen bonds: A:S.191, A:S.193, A:H.231
- Salt bridges: A:H.90, A:H.90, A:H.92, A:H.95, A:H.166, A:H.166, A:H.231
LMP.8: 18 residues within 4Å:- Chain B: Y.17, W.23, H.90, H.92, D.94, H.95, F.130, I.134, H.166, S.191, S.193, P.195, H.231, A.234, K.262
- Ligands: ZN.6, ZN.7, PGE.9
13 PLIP interactions:13 interactions with chain B- Hydrophobic interactions: B:F.130, B:I.134, B:P.195
- Hydrogen bonds: B:S.191, B:S.193, B:H.231
- Salt bridges: B:H.90, B:H.90, B:H.92, B:H.95, B:H.166, B:H.166, B:H.231
LMP.13: 18 residues within 4Å:- Chain C: Y.17, W.23, H.90, H.92, D.94, H.95, F.130, I.134, H.166, S.191, S.193, P.195, H.231, A.234, K.262
- Ligands: ZN.11, ZN.12, PGE.14
14 PLIP interactions:14 interactions with chain C- Hydrophobic interactions: C:F.130, C:I.134, C:P.195
- Hydrogen bonds: C:Y.17, C:S.191, C:S.193, C:H.231
- Salt bridges: C:H.90, C:H.90, C:H.92, C:H.95, C:H.166, C:H.166, C:H.231
LMP.18: 18 residues within 4Å:- Chain D: Y.17, W.23, H.90, H.92, D.94, H.95, F.130, I.134, H.166, S.191, S.193, P.195, H.231, A.234, K.262
- Ligands: ZN.16, ZN.17, PGE.19
14 PLIP interactions:14 interactions with chain D- Hydrophobic interactions: D:F.130, D:I.134, D:P.195
- Hydrogen bonds: D:Y.17, D:S.191, D:S.193, D:H.231
- Salt bridges: D:H.90, D:H.90, D:H.92, D:H.95, D:H.166, D:H.166, D:H.231
- 4 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
PGE.4: 7 residues within 4Å:- Chain A: A.234, Y.255, A.258, A.259, K.262
- Ligands: LMP.3, EDO.5
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:K.262
PGE.9: 7 residues within 4Å:- Chain B: A.234, Y.255, A.258, A.259, K.262
- Ligands: LMP.8, EDO.10
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:K.262
PGE.14: 7 residues within 4Å:- Chain C: A.234, Y.255, A.258, A.259, K.262
- Ligands: LMP.13, EDO.15
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:K.262
PGE.19: 7 residues within 4Å:- Chain D: A.234, Y.255, A.258, A.259, K.262
- Ligands: LMP.18, EDO.20
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:K.262
- 4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.5: 6 residues within 4Å:- Chain A: S.193, A.194, P.195, K.262, Q.266
- Ligands: PGE.4
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:A.194
EDO.10: 6 residues within 4Å:- Chain B: S.193, A.194, P.195, K.262, Q.266
- Ligands: PGE.9
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:A.194
EDO.15: 6 residues within 4Å:- Chain C: S.193, A.194, P.195, K.262, Q.266
- Ligands: PGE.14
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:A.194
EDO.20: 6 residues within 4Å:- Chain D: S.193, A.194, P.195, K.262, Q.266
- Ligands: PGE.19
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:A.194
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kim, Y. et al., Crystal Structure of the Metallo-beta-Lactamase L1 from Stenotrophomonas maltophilia in the Complex with Hydrolyzed Meropenem. To Be Published
- Release Date
- 2019-09-18
- Peptides
- Putative metallo-beta-lactamase l1 (Beta-lactamase type ii) (Ec 3.5.2.6) (Penicillinase): ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.98 Å
- Oligo State
- homo-tetramer
- Ligands
- 8 x ZN: ZINC ION(Non-covalent)
- 4 x LMP: (2~{S},3~{R},4~{S})-2-[(2~{S},3~{R})-1,3-bis(oxidanyl)-1-oxidanylidene-butan-2-yl]-4-[(3~{S},5~{S})-5-(dimethylcarbamoy l)pyrrolidin-3-yl]sulfanyl-3-methyl-3,4-dihydro-2~{H}-pyrrole-5-carboxylic acid(Non-covalent)
- 4 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- 4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kim, Y. et al., Crystal Structure of the Metallo-beta-Lactamase L1 from Stenotrophomonas maltophilia in the Complex with Hydrolyzed Meropenem. To Be Published
- Release Date
- 2019-09-18
- Peptides
- Putative metallo-beta-lactamase l1 (Beta-lactamase type ii) (Ec 3.5.2.6) (Penicillinase): ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A