SMTL ID : 6ubn.1

Crystal structure of D678E GoxA bound to glycine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

homo-tetramer

Ligands

4 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: D.360, A.362, I.365, A.699, N.700 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.360, A:A.362, A:I.365, A:A.699, H2O.2 MG.2: 6 residues within 4Å: Chain B: D.360, A.362, P.363, I.365, A.699, N.700 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.360, B:A.362, B:I.365, B:A.699, H2O.20 MG.4: 5 residues within 4Å: Chain C: D.360, A.362, I.365, A.699, N.700 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:D.360, C:A.362, C:I.365, C:A.699, H2O.34 MG.5: 6 residues within 4Å: Chain D: D.360, A.362, P.363, I.365, A.699, N.700 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:D.360, D:A.362, D:I.365, D:A.699, H2O.52

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 2 residues within 4Å: Chain B: S.438, S.440 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:S.438, B:S.440 Water bridges: B:S.438, B:S.438, B:S.440

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mamounis, K.J. et al., Kinetic and structural evidence that Asp-678 plays multiple roles in catalysis by the quinoprotein glycine oxidase. J.Biol.Chem. (2019)

Release Date

2019-10-23

Peptides

Quinoprotein glycine oxidase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Quinoprotein glycine oxidase