SMTL ID : 6uee.1 (1 other biounit)

Pseudomonas aeruginosa LpxA Complex Structure with Ligand

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-trimer

Ligands

4 x Q5M: 4-(naphthalen-1-yl)-4-oxobutanoic acid(Non-covalent)

Q5M.1: 10 residues within 4Å: Chain A: H.118, A.136, A.138, H.156, Q.157 Chain C: V.132, N.133, S.150, G.151, M.169 8 PLIP interactions: 3 interactions with chain C, 5 interactions with chain A Hydrophobic interactions: C:V.132, C:N.133, A:A.136, A:A.138 Hydrogen bonds: C:G.151, A:Q.157 Water bridges: A:H.156 Salt bridges: A:H.156 Q5M.2: 10 residues within 4Å: Chain A: L.3, D.5, V.22, G.23, P.24, V.39, I.40, G.41, P.42, R.57 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.3, A:L.3, A:D.5, A:V.39 Salt bridges: A:R.57 Q5M.4: 10 residues within 4Å: Chain A: M.114, V.132, N.133, S.150, G.151, F.166 Chain B: H.118, A.136, A.138, H.156 8 PLIP interactions: 5 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:V.132, A:N.133, B:A.136, B:A.138 Hydrogen bonds: A:S.150, A:S.150, A:G.151 Salt bridges: B:H.156 Q5M.7: 10 residues within 4Å: Chain B: V.132, N.133, S.150, G.151, M.169 Chain C: H.118, A.136, A.138, H.156, Q.157 8 PLIP interactions: 5 interactions with chain C, 3 interactions with chain B Hydrophobic interactions: C:A.136, C:A.138, B:V.132, B:N.133 Hydrogen bonds: C:Q.157, C:Q.157, B:G.151 Salt bridges: C:H.156

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 3 residues within 4Å: Chain A: R.246, D.247, Q.250 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.247, A:Q.250 GOL.5: 8 residues within 4Å: Chain B: P.42, R.57, Y.59, Q.60 Chain C: I.27, V.45, K.47, E.66 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain B Hydrogen bonds: C:E.66, B:R.57 GOL.6: 3 residues within 4Å: Chain B: D.144, D.145, A.163 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.144 Water bridges: B:D.145 GOL.8: 6 residues within 4Å: Chain C: F.166, T.182, F.184, N.194, F.195, E.196 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:F.195, C:E.196 Water bridges: C:M.193, C:R.199

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kroeck, K.G. et al., Discovery of dual-activity small-molecule ligands of Pseudomonas aeruginosa LpxA and LpxD using SPR and X-ray crystallography. Sci Rep (2019)

Release Date

2019-11-13

Peptides

Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase

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