SMTL ID : 6ueg.2 (1 other biounit)

Pseudomonas aeruginosa LpxA Complex Structure with Ligand

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-trimer

Ligands

3 x Q5G: 3-({2-[(2R)-2-carbamoyl-2,3-dihydro-4H-1,4-benzoxazin-4-yl]-2-oxoethyl}sulfanyl)propanoic acid(Non-covalent)

Q5G.1: 11 residues within 4Å: Chain A: T.68, H.118, A.136, A.138, H.156, Q.157 Chain B: V.132, N.133, S.150, G.151, M.169 9 PLIP interactions: 6 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:A.136, A:A.138, B:N.133 Hydrogen bonds: A:T.68, A:Q.157, B:G.151 Water bridges: A:H.95, B:N.133 Salt bridges: A:H.156 Q5G.2: 12 residues within 4Å: Chain B: D.70, H.118, H.121, A.136, A.138, H.156, Q.157 Chain C: V.132, N.133, S.150, G.151, M.169 9 PLIP interactions: 7 interactions with chain B, 2 interactions with chain C Hydrophobic interactions: B:A.136, B:A.138, C:N.133 Hydrogen bonds: B:D.70, B:D.70, B:Q.157, B:Q.157, C:G.151 Salt bridges: B:H.156 Q5G.3: 14 residues within 4Å: Chain A: V.132, N.133, S.150, G.151, M.169 Chain C: T.68, D.70, H.118, H.121, A.136, A.138, H.156, Q.157, R.254 12 PLIP interactions: 9 interactions with chain C, 3 interactions with chain A Hydrophobic interactions: C:A.136, C:A.138, C:H.156, C:Q.157, A:V.132, A:N.133 Hydrogen bonds: C:T.68, C:D.70, C:Q.157, A:G.151 Salt bridges: C:H.156, C:R.254

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kroeck, K.G. et al., Discovery of dual-activity small-molecule ligands of Pseudomonas aeruginosa LpxA and LpxD using SPR and X-ray crystallography. Sci Rep (2019)

Release Date

2019-11-13

Peptides

Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
E

C
F

Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase

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