- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-60-mer
- Ligands
- 60 x DC: 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE(Non-functional Binders)
- 60 x DA: 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE(Non-covalent)
DA.2: 6 residues within 4Å:- Chain A: P.205, H.415, P.416, S.417, G.424
- Ligands: DC.1
Protein-ligand interaction information (PLIP) not availableDA.4: 6 residues within 4Å:- Chain B: P.205, H.415, P.416, S.417, G.424
- Ligands: DC.3
Protein-ligand interaction information (PLIP) not availableDA.6: 6 residues within 4Å:- Chain C: P.205, H.415, P.416, S.417, G.424
- Ligands: DC.5
Protein-ligand interaction information (PLIP) not availableDA.8: 6 residues within 4Å:- Chain D: P.205, H.415, P.416, S.417, G.424
- Ligands: DC.7
Protein-ligand interaction information (PLIP) not availableDA.10: 6 residues within 4Å:- Chain E: P.205, H.415, P.416, S.417, G.424
- Ligands: DC.9
Protein-ligand interaction information (PLIP) not availableDA.12: 6 residues within 4Å:- Chain F: P.205, H.415, P.416, S.417, G.424
- Ligands: DC.11
Protein-ligand interaction information (PLIP) not availableDA.14: 6 residues within 4Å:- Chain G: P.205, H.415, P.416, S.417, G.424
- Ligands: DC.13
Protein-ligand interaction information (PLIP) not availableDA.16: 6 residues within 4Å:- Chain H: P.205, H.415, P.416, S.417, G.424
- Ligands: DC.15
8 PLIP interactions:1 interactions with chain J, 1 interactions with chain O, 1 interactions with chain I, 1 interactions with chain K, 1 interactions with chain H, 1 interactions with chain M, 1 interactions with chain N, 1 interactions with chain L- Hydrogen bonds: J:S.417, O:S.417, I:S.417, K:S.417, H:S.417, M:S.417, N:S.417, L:S.417
DA.18: 6 residues within 4Å:- Chain I: P.205, H.415, P.416, S.417, G.424
- Ligands: DC.17
Protein-ligand interaction information (PLIP) not availableDA.20: 6 residues within 4Å:- Chain J: P.205, H.415, P.416, S.417, G.424
- Ligands: DC.19
Protein-ligand interaction information (PLIP) not availableDA.22: 6 residues within 4Å:- Chain K: P.205, H.415, P.416, S.417, G.424
- Ligands: DC.21
Protein-ligand interaction information (PLIP) not availableDA.24: 6 residues within 4Å:- Chain L: P.205, H.415, P.416, S.417, G.424
- Ligands: DC.23
Protein-ligand interaction information (PLIP) not availableDA.26: 6 residues within 4Å:- Chain M: P.205, H.415, P.416, S.417, G.424
- Ligands: DC.25
Protein-ligand interaction information (PLIP) not availableDA.28: 6 residues within 4Å:- Chain N: P.205, H.415, P.416, S.417, G.424
- Ligands: DC.27
Protein-ligand interaction information (PLIP) not availableDA.30: 6 residues within 4Å:- Chain O: P.205, H.415, P.416, S.417, G.424
- Ligands: DC.29
Protein-ligand interaction information (PLIP) not availableDA.32: 6 residues within 4Å:- Chain P: P.205, H.415, P.416, S.417, G.424
- Ligands: DC.31
Protein-ligand interaction information (PLIP) not availableDA.34: 6 residues within 4Å:- Chain Q: P.205, H.415, P.416, S.417, G.424
- Ligands: DC.33
Protein-ligand interaction information (PLIP) not availableDA.36: 6 residues within 4Å:- Chain R: P.205, H.415, P.416, S.417, G.424
- Ligands: DC.35
Protein-ligand interaction information (PLIP) not availableDA.38: 6 residues within 4Å:- Chain S: P.205, H.415, P.416, S.417, G.424
- Ligands: DC.37
Protein-ligand interaction information (PLIP) not availableDA.40: 6 residues within 4Å:- Chain T: P.205, H.415, P.416, S.417, G.424
- Ligands: DC.39
Protein-ligand interaction information (PLIP) not availableDA.42: 6 residues within 4Å:- Chain U: P.205, H.415, P.416, S.417, G.424
- Ligands: DC.41
Protein-ligand interaction information (PLIP) not availableDA.44: 6 residues within 4Å:- Chain V: P.205, H.415, P.416, S.417, G.424
- Ligands: DC.43
Protein-ligand interaction information (PLIP) not availableDA.46: 6 residues within 4Å:- Chain W: P.205, H.415, P.416, S.417, G.424
- Ligands: DC.45
8 PLIP interactions:1 interactions with chain 0, 1 interactions with chain Z, 1 interactions with chain W, 1 interactions with chain 1, 1 interactions with chain 3, 1 interactions with chain Y, 1 interactions with chain X, 1 interactions with chain 2- Hydrogen bonds: 0:S.417, Z:S.417, W:S.417, 1:S.417, 3:S.417, Y:S.417, X:S.417, 2:S.417
DA.48: 6 residues within 4Å:- Chain X: P.205, H.415, P.416, S.417, G.424
- Ligands: DC.47
Protein-ligand interaction information (PLIP) not availableDA.50: 6 residues within 4Å:- Chain Y: P.205, H.415, P.416, S.417, G.424
- Ligands: DC.49
Protein-ligand interaction information (PLIP) not availableDA.52: 6 residues within 4Å:- Chain Z: P.205, H.415, P.416, S.417, G.424
- Ligands: DC.51
Protein-ligand interaction information (PLIP) not availableDA.54: 6 residues within 4Å:- Chain 0: P.205, H.415, P.416, S.417, G.424
- Ligands: DC.53
Protein-ligand interaction information (PLIP) not availableDA.56: 6 residues within 4Å:- Chain 1: P.205, H.415, P.416, S.417, G.424
- Ligands: DC.55
Protein-ligand interaction information (PLIP) not availableDA.58: 6 residues within 4Å:- Chain 2: P.205, H.415, P.416, S.417, G.424
- Ligands: DC.57
Protein-ligand interaction information (PLIP) not availableDA.60: 6 residues within 4Å:- Chain 3: P.205, H.415, P.416, S.417, G.424
- Ligands: DC.59
Protein-ligand interaction information (PLIP) not availableDA.62: 6 residues within 4Å:- Chain 4: P.205, H.415, P.416, S.417, G.424
- Ligands: DC.61
Protein-ligand interaction information (PLIP) not availableDA.64: 6 residues within 4Å:- Chain 5: P.205, H.415, P.416, S.417, G.424
- Ligands: DC.63
Protein-ligand interaction information (PLIP) not availableDA.66: 6 residues within 4Å:- Chain 6: P.205, H.415, P.416, S.417, G.424
- Ligands: DC.65
Protein-ligand interaction information (PLIP) not availableDA.68: 6 residues within 4Å:- Chain 7: P.205, H.415, P.416, S.417, G.424
- Ligands: DC.67
Protein-ligand interaction information (PLIP) not availableDA.70: 6 residues within 4Å:- Chain 8: P.205, H.415, P.416, S.417, G.424
- Ligands: DC.69
Protein-ligand interaction information (PLIP) not availableDA.72: 6 residues within 4Å:- Chain 9: P.205, H.415, P.416, S.417, G.424
- Ligands: DC.71
Protein-ligand interaction information (PLIP) not availableDA.74: 6 residues within 4Å:- Ligands: DC.73
- Chain a: P.205, H.415, P.416, S.417, G.424
Protein-ligand interaction information (PLIP) not availableDA.76: 6 residues within 4Å:- Ligands: DC.75
- Chain b: P.205, H.415, P.416, S.417, G.424
8 PLIP interactions:1 interactions with chain e, 1 interactions with chain i, 1 interactions with chain f, 1 interactions with chain h, 1 interactions with chain b, 1 interactions with chain d, 1 interactions with chain c, 1 interactions with chain g- Hydrogen bonds: e:S.417, i:S.417, f:S.417, h:S.417, b:S.417, d:S.417, c:S.417, g:S.417
DA.78: 6 residues within 4Å:- Ligands: DC.77
- Chain c: P.205, H.415, P.416, S.417, G.424
Protein-ligand interaction information (PLIP) not availableDA.80: 6 residues within 4Å:- Ligands: DC.79
- Chain d: P.205, H.415, P.416, S.417, G.424
Protein-ligand interaction information (PLIP) not availableDA.82: 6 residues within 4Å:- Ligands: DC.81
- Chain e: P.205, H.415, P.416, S.417, G.424
Protein-ligand interaction information (PLIP) not availableDA.84: 6 residues within 4Å:- Ligands: DC.83
- Chain f: P.205, H.415, P.416, S.417, G.424
Protein-ligand interaction information (PLIP) not availableDA.86: 6 residues within 4Å:- Ligands: DC.85
- Chain g: P.205, H.415, P.416, S.417, G.424
Protein-ligand interaction information (PLIP) not availableDA.88: 6 residues within 4Å:- Ligands: DC.87
- Chain h: P.205, H.415, P.416, S.417, G.424
Protein-ligand interaction information (PLIP) not availableDA.90: 6 residues within 4Å:- Ligands: DC.89
- Chain i: P.205, H.415, P.416, S.417, G.424
Protein-ligand interaction information (PLIP) not availableDA.92: 6 residues within 4Å:- Ligands: DC.91
- Chain j: P.205, H.415, P.416, S.417, G.424
Protein-ligand interaction information (PLIP) not availableDA.94: 6 residues within 4Å:- Ligands: DC.93
- Chain k: P.205, H.415, P.416, S.417, G.424
Protein-ligand interaction information (PLIP) not availableDA.96: 6 residues within 4Å:- Ligands: DC.95
- Chain l: P.205, H.415, P.416, S.417, G.424
Protein-ligand interaction information (PLIP) not availableDA.98: 6 residues within 4Å:- Ligands: DC.97
- Chain m: P.205, H.415, P.416, S.417, G.424
Protein-ligand interaction information (PLIP) not availableDA.100: 6 residues within 4Å:- Ligands: DC.99
- Chain n: P.205, H.415, P.416, S.417, G.424
Protein-ligand interaction information (PLIP) not availableDA.102: 6 residues within 4Å:- Ligands: DC.101
- Chain o: P.205, H.415, P.416, S.417, G.424
Protein-ligand interaction information (PLIP) not availableDA.104: 6 residues within 4Å:- Ligands: DC.103
- Chain p: P.205, H.415, P.416, S.417, G.424
Protein-ligand interaction information (PLIP) not availableDA.106: 6 residues within 4Å:- Ligands: DC.105
- Chain q: P.205, H.415, P.416, S.417, G.424
8 PLIP interactions:1 interactions with chain s, 1 interactions with chain v, 1 interactions with chain r, 1 interactions with chain x, 1 interactions with chain q, 1 interactions with chain u, 1 interactions with chain t, 1 interactions with chain w- Hydrogen bonds: s:S.417, v:S.417, r:S.417, x:S.417, q:S.417, u:S.417, t:S.417, w:S.417
DA.108: 6 residues within 4Å:- Ligands: DC.107
- Chain r: P.205, H.415, P.416, S.417, G.424
Protein-ligand interaction information (PLIP) not availableDA.110: 6 residues within 4Å:- Ligands: DC.109
- Chain s: P.205, H.415, P.416, S.417, G.424
Protein-ligand interaction information (PLIP) not availableDA.112: 6 residues within 4Å:- Ligands: DC.111
- Chain t: P.205, H.415, P.416, S.417, G.424
Protein-ligand interaction information (PLIP) not availableDA.114: 6 residues within 4Å:- Ligands: DC.113
- Chain u: P.205, H.415, P.416, S.417, G.424
Protein-ligand interaction information (PLIP) not availableDA.116: 6 residues within 4Å:- Ligands: DC.115
- Chain v: P.205, H.415, P.416, S.417, G.424
Protein-ligand interaction information (PLIP) not availableDA.118: 6 residues within 4Å:- Ligands: DC.117
- Chain w: P.205, H.415, P.416, S.417, G.424
Protein-ligand interaction information (PLIP) not availableDA.120: 6 residues within 4Å:- Ligands: DC.119
- Chain x: P.205, H.415, P.416, S.417, G.424
Protein-ligand interaction information (PLIP) not available- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mietzsch, M. et al., Comparative Analysis of the Capsid Structures of AAVrh.10, AAVrh.39, and AAV8. J.Virol. (2020)
- Release Date
- 2019-12-11
- Peptides
- Capsid protein VP1: ABCDEFGHIJKLMNOPQRSTUVWXYZ0123456789abcdefghijklmnopqrstuvwx
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
HI
IJ
JK
KL
LM
MN
NO
OP
PQ
QR
RS
ST
TU
UV
VW
WX
XY
YZ
Z0
a1
b2
c3
d4
e5
f6
g7
h8
i9
ja
kb
lc
md
ne
of
pg
qh
ri
sj
tk
ul
vm
wn
xo
yp
zq
1r
2s
3t
4u
5v
6w
7x
8
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-60-mer
- Ligands
- 60 x DC: 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE(Non-functional Binders)
- 60 x DA: 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mietzsch, M. et al., Comparative Analysis of the Capsid Structures of AAVrh.10, AAVrh.39, and AAV8. J.Virol. (2020)
- Release Date
- 2019-12-11
- Peptides
- Capsid protein VP1: ABCDEFGHIJKLMNOPQRSTUVWXYZ0123456789abcdefghijklmnopqrstuvwx
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
HI
IJ
JK
KL
LM
MN
NO
OP
PQ
QR
RS
ST
TU
UV
VW
WX
XY
YZ
Z0
a1
b2
c3
d4
e5
f6
g7
h8
i9
ja
kb
lc
md
ne
of
pg
qh
ri
sj
tk
ul
vm
wn
xo
yp
zq
1r
2s
3t
4u
5v
6w
7x
8