SMTL ID : 6v2h.4 (5 other biounits)

Crystal structure of CDYL2 in complex with H3tK27me3

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NI: NICKEL (II) ION(Non-covalent)

NI.1: 3 residues within 4Å: Chain A: G.1, H.43, H.44 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:G.1, A:H.43, A:H.44

5 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.2: 2 residues within 4Å: Chain A: E.42, H.43 No protein-ligand interaction detected (PLIP) UNX.3: 3 residues within 4Å: Chain A: G.33, T.35, E.36 No protein-ligand interaction detected (PLIP) UNX.4: 2 residues within 4Å: Chain A: E.8 Ligands: UNX.5 No protein-ligand interaction detected (PLIP) UNX.5: 3 residues within 4Å: Chain A: Y.7, E.8 Ligands: UNX.4 No protein-ligand interaction detected (PLIP) UNX.6: 4 residues within 4Å: Chain A: L.46, H.47 Chain B: X.1, A.2 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dong, C. et al., Structural Basis for the Binding Selectivity of Human CDY Chromodomains. Cell Chem Biol (2020)

Release Date

2019-12-25

Peptides

Chromodomain Y-like protein 2: A
H3tK27me3: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

B
H

Chromodomain Y-like protein 2

H3tK27me3

Related Entries With Identical Sequence