SMTL ID : 6v70.1

Crystal Structure of Metallo Beta Lactamase from Hirschia baltica with Cadmium in the Active Site

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 8 residues within 4Å: Chain A: H.92, H.154, C.173, N.185 Ligands: EDO.3, CL.4, CD.5, CD.6 Ligand excluded by PLIP CL.2: 2 residues within 4Å: Chain A: M.104 Ligands: CD.7 Ligand excluded by PLIP CL.4: 7 residues within 4Å: Chain A: H.154, G.184, N.185, H.215 Ligands: CL.1, EDO.3, CD.5 Ligand excluded by PLIP CL.10: 5 residues within 4Å: Chain A: T.112, D.113, L.114, I.133, S.134 Ligand excluded by PLIP

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 7 residues within 4Å: Chain A: D.94, C.173, H.215 Ligands: CL.1, CL.4, CD.5, CD.6 No protein-ligand interaction detected (PLIP) EDO.8: 5 residues within 4Å: Chain A: H.103, G.106, V.107, E.108, K.128 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.103, A:H.103, A:E.108, A:E.108

3 x CD: CADMIUM ION(Non-covalent)

CD.5: 6 residues within 4Å: Chain A: C.173, H.215 Ligands: CL.1, EDO.3, CL.4, CD.6 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:C.173, A:H.215 CD.6: 7 residues within 4Å: Chain A: H.90, H.92, H.154, C.173 Ligands: CL.1, EDO.3, CD.5 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.90, A:H.92, A:H.154, H2O.1 CD.7: 3 residues within 4Å: Chain A: D.100, M.104 Ligands: CL.2 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.100, A:D.100, H2O.4

1 x FMT: FORMIC ACID(Non-functional Binders)

FMT.9: 6 residues within 4Å: Chain A: T.26, G.27, I.50, E.51, E.163, V.165 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.51, A:E.163

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Maltseva, N. et al., Crystal Structure of Metallo Beta Lactamase from Hirschia baltica. To Be Published

Release Date

2019-12-25

Peptides

Beta-lactamase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-lactamase

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