- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.40 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x ACT: ACETATE ION(Non-functional Binders)
- 3 x BEZ: BENZOIC ACID(Non-covalent)
BEZ.2: 13 residues within 4Å:- Chain A: L.265, N.284, L.286, F.294, H.297, N.299, V.304, L.306, I.348, V.354, L.356, M.364, R.376
9 PLIP interactions:9 interactions with chain A- Hydrophobic interactions: A:L.286, A:L.306, A:L.306, A:I.348
- Hydrogen bonds: A:N.284, A:N.299
- Salt bridges: A:H.297, A:R.376
- pi-Stacking: A:F.294
BEZ.5: 13 residues within 4Å:- Chain B: L.265, N.284, L.286, F.294, H.297, N.299, V.304, L.306, I.348, V.354, L.356, M.364, R.376
9 PLIP interactions:9 interactions with chain B- Hydrophobic interactions: B:L.286, B:L.306, B:L.306, B:I.348
- Hydrogen bonds: B:N.284, B:N.299
- Salt bridges: B:H.297, B:R.376
- pi-Stacking: B:F.294
BEZ.8: 13 residues within 4Å:- Chain C: L.265, N.284, L.286, F.294, H.297, N.299, V.304, L.306, I.348, V.354, L.356, M.364, R.376
9 PLIP interactions:9 interactions with chain C- Hydrophobic interactions: C:L.286, C:L.306, C:L.306, C:I.348
- Hydrogen bonds: C:N.284, C:N.299
- Salt bridges: C:H.297, C:R.376
- pi-Stacking: C:F.294
- 3 x CIT: CITRIC ACID(Non-functional Binders)
CIT.3: 14 residues within 4Å:- Chain A: L.59, L.67, L.89, Y.91, L.99, H.102, S.104, L.108, F.146, L.148, K.161, V.172, D.174, F.176
9 PLIP interactions:9 interactions with chain A- Hydrophobic interactions: A:L.67, A:L.89, A:K.161
- Hydrogen bonds: A:D.174
- Water bridges: A:D.174
- Salt bridges: A:H.102, A:H.102, A:K.161, A:K.161
CIT.6: 14 residues within 4Å:- Chain B: L.59, L.67, L.89, Y.91, L.99, H.102, S.104, L.108, F.146, L.148, K.161, V.172, D.174, F.176
9 PLIP interactions:9 interactions with chain B- Hydrophobic interactions: B:L.67, B:L.89, B:K.161
- Hydrogen bonds: B:D.174
- Water bridges: B:D.174
- Salt bridges: B:H.102, B:H.102, B:K.161, B:K.161
CIT.9: 14 residues within 4Å:- Chain C: L.59, L.67, L.89, Y.91, L.99, H.102, S.104, L.108, F.146, L.148, K.161, V.172, D.174, F.176
9 PLIP interactions:9 interactions with chain C- Hydrophobic interactions: C:L.67, C:L.89, C:K.161
- Hydrogen bonds: C:D.174
- Water bridges: C:D.174
- Salt bridges: C:H.102, C:H.102, C:K.161, C:K.161
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- McPherson, A., Binding of benzoic acid and anions within the cupin domains of the vicilin protein canavalin from jack bean (Canavalia ensiformis): Crystal structures. Biochem.Biophys.Res.Commun. (2020)
- Release Date
- 2020-02-19
- Peptides
- Canavalin: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.40 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x ACT: ACETATE ION(Non-functional Binders)
- 3 x BEZ: BENZOIC ACID(Non-covalent)
- 3 x CIT: CITRIC ACID(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- McPherson, A., Binding of benzoic acid and anions within the cupin domains of the vicilin protein canavalin from jack bean (Canavalia ensiformis): Crystal structures. Biochem.Biophys.Res.Commun. (2020)
- Release Date
- 2020-02-19
- Peptides
- Canavalin: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A