SMTL ID : 6v7l.1

The structure of the P212121 crystal form of canavalin at 173 K

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-trimer

Ligands

3 x BEZ: BENZOIC ACID(Non-covalent)

BEZ.1: 13 residues within 4Å: Chain A: L.265, N.284, L.286, F.294, H.297, N.299, V.304, L.306, I.348, V.354, L.356, G.366, R.376 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.306 Hydrogen bonds: A:N.299 Salt bridges: A:H.297, A:R.376 BEZ.2: 13 residues within 4Å: Chain B: L.265, N.284, L.286, F.294, H.297, N.299, V.304, L.306, I.348, V.354, L.356, G.366, R.376 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:F.294, B:V.304, B:L.306 Hydrogen bonds: B:N.299, B:N.299, B:R.376 Salt bridges: B:H.297 BEZ.3: 12 residues within 4Å: Chain C: L.265, N.284, L.286, F.294, H.297, N.299, V.304, L.306, I.348, V.354, L.356, R.376 7 PLIP interactions: 7 interactions with chain C Hydrophobic interactions: C:L.265, C:L.306 Hydrogen bonds: C:N.299, C:N.299, C:R.376 Salt bridges: C:H.297 pi-Stacking: C:F.294

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McPherson, A., Binding of benzoic acid and anions within the cupin domains of the vicilin protein canavalin from jack bean (Canavalia ensiformis): Crystal structures. Biochem.Biophys.Res.Commun. (2020)

Release Date

2020-02-19

Peptides

Canavalin: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Canavalin

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