- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-6-14-mer
- Ligands
- 1 x UNK- UNK- UNK- UNK- UNK- UNK- UNK: Unidentified protein substrate(Non-covalent)
- 4 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
ATP.2: 22 residues within 4Å:- Chain A: H.77, V.78, I.79, G.80, Q.81, T.121, G.122, S.123, G.124, K.125, T.126, L.127, Q.185, A.250, L.316, I.324, P.328, A.368, R.369
- Chain C: E.302, R.306
- Ligands: MG.3
16 PLIP interactions:12 interactions with chain A, 4 interactions with chain C- Hydrogen bonds: A:I.79, A:G.122, A:S.123, A:G.124, A:K.125, A:T.126, A:T.126, A:L.127, C:E.302, C:E.302, C:R.306
- Salt bridges: A:K.125, A:K.125, A:R.369, A:R.369, C:R.306
ATP.6: 22 residues within 4Å:- Chain D: H.77, V.78, I.79, Q.81, T.121, G.122, S.123, G.124, K.125, T.126, L.127, Q.185, A.250, L.316, I.324, P.328, Q.335, A.368, R.369
- Chain F: E.302, R.306
- Ligands: MG.7
16 PLIP interactions:13 interactions with chain D, 3 interactions with chain F- Hydrogen bonds: D:I.79, D:G.122, D:S.123, D:G.124, D:G.124, D:K.125, D:T.126, D:T.126, D:L.127, F:E.302, F:E.302
- Salt bridges: D:K.125, D:K.125, D:R.369, D:R.369, F:R.306
ATP.8: 21 residues within 4Å:- Chain D: E.302, R.306
- Chain E: H.77, V.78, I.79, Q.81, T.121, G.122, S.123, G.124, K.125, T.126, L.127, A.250, L.316, I.324, P.328, Q.335, A.368, R.369
- Ligands: MG.9
14 PLIP interactions:12 interactions with chain E, 2 interactions with chain D- Hydrogen bonds: E:I.79, E:G.122, E:S.123, E:S.123, E:G.124, E:K.125, E:T.126, E:L.127, D:E.302
- Salt bridges: E:K.125, E:K.125, E:R.369, E:R.369, D:R.306
ATP.10: 24 residues within 4Å:- Chain A: E.216, E.302, R.306
- Chain F: H.77, V.78, I.79, Q.81, T.121, G.122, S.123, G.124, K.125, T.126, L.127, Q.185, A.250, L.316, I.324, P.328, Q.335, A.368, R.369, R.372
- Ligands: MG.11
17 PLIP interactions:13 interactions with chain F, 4 interactions with chain A- Hydrogen bonds: F:I.79, F:G.122, F:S.123, F:G.124, F:K.125, F:T.126, F:T.126, F:T.126, F:L.127, A:E.302, A:E.302, A:R.306
- Salt bridges: F:K.125, F:K.125, F:R.369, F:R.369, A:R.306
- 4 x MG: MAGNESIUM ION(Non-covalent)
MG.3: 6 residues within 4Å:- Chain A: T.126, D.184
- Chain C: K.213, E.216, R.306
- Ligands: ATP.2
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:T.126, A:D.184
MG.7: 7 residues within 4Å:- Chain D: T.126, Y.182, D.184, Q.185
- Chain F: K.213, R.306
- Ligands: ATP.6
2 PLIP interactions:2 interactions with chain D- Metal complexes: D:T.126, D:D.184
MG.9: 4 residues within 4Å:- Chain D: R.306
- Chain E: T.126, D.184
- Ligands: ATP.8
1 PLIP interactions:1 interactions with chain E- Metal complexes: E:T.126
MG.11: 5 residues within 4Å:- Chain A: R.306
- Chain F: T.126, D.184, Q.185
- Ligands: ATP.10
1 PLIP interactions:1 interactions with chain F- Metal complexes: F:T.126
- 2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
ADP.4: 15 residues within 4Å:- Chain B: H.77, V.78, I.79, Q.81, G.122, S.123, G.124, K.125, T.126, L.127, L.316, I.324, N.330, A.368, R.369
8 PLIP interactions:8 interactions with chain B- Hydrogen bonds: B:I.79, B:Q.81, B:G.122, B:S.123, B:G.124, B:K.125, B:T.126, B:T.126
ADP.5: 16 residues within 4Å:- Chain C: H.77, V.78, I.79, Q.81, T.121, G.122, S.123, G.124, K.125, T.126, L.127, L.316, I.324, P.328, A.368, R.369
9 PLIP interactions:9 interactions with chain C- Hydrogen bonds: C:I.79, C:Q.81, C:G.122, C:G.124, C:K.125, C:T.126, C:T.126, C:L.127
- Salt bridges: C:K.125
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ripstein, Z.A. et al., A processive rotary mechanism couples substrate unfolding and proteolysis in the ClpXP degradation machinery. Elife (2020)
- Release Date
- 2020-01-22
- Peptides
- ATP-dependent Clp protease ATP-binding subunit ClpX: ABCDEF
ATP-dependent Clp protease proteolytic subunit: GHIJKLMNOPQRST - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
EB
AC
FD
CE
BF
DG
LH
OI
PJ
QK
RL
SM
TN
UO
HP
IQ
JR
KS
MT
N
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-6-14-mer
- Ligands
- 1 x UNK- UNK- UNK- UNK- UNK- UNK- UNK: Unidentified protein substrate(Non-covalent)
- 4 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ripstein, Z.A. et al., A processive rotary mechanism couples substrate unfolding and proteolysis in the ClpXP degradation machinery. Elife (2020)
- Release Date
- 2020-01-22
- Peptides
- ATP-dependent Clp protease ATP-binding subunit ClpX: ABCDEF
ATP-dependent Clp protease proteolytic subunit: GHIJKLMNOPQRST - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
EB
AC
FD
CE
BF
DG
LH
OI
PJ
QK
RL
SM
TN
UO
HP
IQ
JR
KS
MT
N