SMTL ID : 6vno.1

Cryo-EM structure of the C-terminal half of the Parkinson's Disease-linked protein Leucine Rich Repeat Kinase 2 (LRRK2)

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 14 residues within 4Å: Chain A: T.17, G.18, S.19, G.20, K.21, T.22, T.23, H.127, D.129, V.130, N.163, A.164, T.165 Ligands: MG.2 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:G.18, A:G.20, A:K.21, A:T.22, A:T.22, A:T.23, A:T.23, A:T.165 Salt bridges: A:K.21, A:D.129 pi-Stacking: A:H.127 pi-Cation interactions: A:H.127

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: T.22 Ligands: GDP.1 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:T.22

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Deniston, C.K. et al., Structure of LRRK2 in Parkinson's disease and model for microtubule interaction. Nature (2020)

Release Date

2020-08-26

Peptides

Leucine-rich repeat serine/threonine-protein kinase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Leucine-rich repeat serine/threonine-protein kinase 2

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