SMTL ID : 6vve.1

Legionella pneumophila Lpg2603 kinase bound to IP6, Mn2+, and ADP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x IHP: INOSITOL HEXAKISPHOSPHATE(Non-covalent)

IHP.1: 16 residues within 4Å: Chain A: L.14, H.17, Y.18, R.30, V.35, W.52, S.54, H.55, K.56, K.87, T.88, K.91, N.134, K.136, Y.142, Y.144 26 PLIP interactions: 26 interactions with chain A Hydrogen bonds: A:Y.18, A:Y.18, A:R.30, A:W.52, A:S.54, A:S.54, A:H.55, A:H.55, A:N.134 Water bridges: A:R.30, A:K.56, A:K.91, A:K.136, A:K.136 Salt bridges: A:H.17, A:H.17, A:R.30, A:K.56, A:K.87, A:K.87, A:K.87, A:K.91, A:K.91, A:K.136, A:K.136, A:K.136

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.2: 19 residues within 4Å: Chain A: L.76, G.77, K.78, G.79, E.80, V.84, A.92, K.94, V.129, M.145, P.146, K.147, I.148, Q.192, N.193, I.195, I.204, D.205 Ligands: MN.3 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:G.79, A:P.146, A:I.148, A:N.193, A:D.205 Water bridges: A:D.181, A:D.205 Salt bridges: A:K.94, A:K.94

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.3: 6 residues within 4Å: Chain A: G.79, E.80, Q.81, G.82, K.94 Ligands: ADP.2 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sreelatha, A. et al., ALegionellaeffector kinase is activated by host inositol hexakisphosphate. J.Biol.Chem. (2020)

Release Date

2020-04-08

Peptides

Dot/Icm T4SS effector: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Dot/Icm T4SS effector