- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x SLG: 2-chloranyl-4-[2-[[(6-chloranyl-1~{H}-indol-2-yl)carbonyl-methyl-amino]methyl]-5-fluoranyl-phenyl]benzoic acid(Non-covalent)
SLG.1: 16 residues within 4Å:- Chain A: S.22, I.23, Y.26, A.81, M.82, M.85, W.110, Y.132, L.164, R.167, L.205, A.206, Y.208, V.209, H.260
- Ligands: FMN.2
11 PLIP interactions:11 interactions with chain A- Hydrophobic interactions: A:Y.26, A:A.81, A:W.110, A:L.205, A:V.209
- Hydrogen bonds: A:R.167
- Water bridges: A:H.260
- Salt bridges: A:H.260
- pi-Stacking: A:Y.26, A:Y.26, A:W.110
SLG.3: 16 residues within 4Å:- Chain B: S.22, I.23, Y.26, A.81, M.82, M.85, W.110, Y.132, L.164, R.167, L.205, A.206, Y.208, V.209, H.260
- Ligands: FMN.4
11 PLIP interactions:11 interactions with chain B- Hydrophobic interactions: B:Y.26, B:A.81, B:W.110, B:L.205, B:V.209
- Hydrogen bonds: B:R.167
- Water bridges: B:H.260
- Salt bridges: B:H.260
- pi-Stacking: B:Y.26, B:Y.26, B:W.110
SLG.5: 16 residues within 4Å:- Chain C: S.22, I.23, Y.26, A.81, M.82, M.85, W.110, Y.132, L.164, R.167, L.205, A.206, Y.208, V.209, H.260
- Ligands: FMN.6
11 PLIP interactions:11 interactions with chain C- Hydrophobic interactions: C:Y.26, C:A.81, C:W.110, C:L.205, C:V.209
- Hydrogen bonds: C:R.167
- Water bridges: C:H.260
- Salt bridges: C:H.260
- pi-Stacking: C:Y.26, C:Y.26, C:W.110
SLG.7: 16 residues within 4Å:- Chain D: S.22, I.23, Y.26, A.81, M.82, M.85, W.110, Y.132, L.164, R.167, L.205, A.206, Y.208, V.209, H.260
- Ligands: FMN.8
11 PLIP interactions:11 interactions with chain D- Hydrophobic interactions: D:Y.26, D:A.81, D:W.110, D:L.205, D:V.209
- Hydrogen bonds: D:R.167
- Water bridges: D:H.260
- Salt bridges: D:H.260
- pi-Stacking: D:Y.26, D:Y.26, D:W.110
- 4 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)
FMN.2: 22 residues within 4Å:- Chain A: Y.27, A.79, T.80, A.81, S.108, W.110, Q.130, Y.132, T.158, K.236, S.258, H.260, G.261, R.263, D.291, G.292, G.293, R.295, V.313, G.314, R.315
- Ligands: SLG.1
23 PLIP interactions:23 interactions with chain A- Hydrophobic interactions: A:Y.27, A:R.315
- Hydrogen bonds: A:A.79, A:A.81, A:Q.130, A:K.236, A:K.236, A:S.258, A:G.261, A:G.292, A:G.293, A:G.314, A:R.315
- Water bridges: A:H.260, A:H.260, A:D.291, A:D.291, A:V.294, A:V.294, A:R.315, A:R.315
- Salt bridges: A:R.295, A:R.315
FMN.4: 22 residues within 4Å:- Chain B: Y.27, A.79, T.80, A.81, S.108, W.110, Q.130, Y.132, T.158, K.236, S.258, H.260, G.261, R.263, D.291, G.292, G.293, R.295, V.313, G.314, R.315
- Ligands: SLG.3
23 PLIP interactions:23 interactions with chain B- Hydrophobic interactions: B:Y.27, B:R.315
- Hydrogen bonds: B:A.79, B:A.81, B:Q.130, B:K.236, B:K.236, B:S.258, B:G.261, B:G.292, B:G.293, B:G.314, B:R.315
- Water bridges: B:H.260, B:H.260, B:D.291, B:D.291, B:V.294, B:V.294, B:R.315, B:R.315
- Salt bridges: B:R.295, B:R.315
FMN.6: 22 residues within 4Å:- Chain C: Y.27, A.79, T.80, A.81, S.108, W.110, Q.130, Y.132, T.158, K.236, S.258, H.260, G.261, R.263, D.291, G.292, G.293, R.295, V.313, G.314, R.315
- Ligands: SLG.5
23 PLIP interactions:23 interactions with chain C- Hydrophobic interactions: C:Y.27, C:R.315
- Hydrogen bonds: C:A.79, C:A.81, C:Q.130, C:K.236, C:K.236, C:S.258, C:G.261, C:G.292, C:G.293, C:G.314, C:R.315
- Water bridges: C:H.260, C:H.260, C:D.291, C:D.291, C:V.294, C:V.294, C:R.315, C:R.315
- Salt bridges: C:R.295, C:R.315
FMN.8: 22 residues within 4Å:- Chain D: Y.27, A.79, T.80, A.81, S.108, W.110, Q.130, Y.132, T.158, K.236, S.258, H.260, G.261, R.263, D.291, G.292, G.293, R.295, V.313, G.314, R.315
- Ligands: SLG.7
23 PLIP interactions:23 interactions with chain D- Hydrophobic interactions: D:Y.27, D:R.315
- Hydrogen bonds: D:A.79, D:A.81, D:Q.130, D:K.236, D:K.236, D:S.258, D:G.261, D:G.292, D:G.293, D:G.314, D:R.315
- Water bridges: D:H.260, D:H.260, D:D.291, D:D.291, D:V.294, D:V.294, D:R.315, D:R.315
- Salt bridges: D:R.295, D:R.315
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lee, E.C.Y. et al., Discovery of Novel, Potent Inhibitors of Hydroxy Acid Oxidase 1 (HAO1) Using DNA-Encoded Chemical Library Screening. J.Med.Chem. (2021)
- Release Date
- 2021-05-12
- Peptides
- Hydroxyacid oxidase 1: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x SLG: 2-chloranyl-4-[2-[[(6-chloranyl-1~{H}-indol-2-yl)carbonyl-methyl-amino]methyl]-5-fluoranyl-phenyl]benzoic acid(Non-covalent)
- 4 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lee, E.C.Y. et al., Discovery of Novel, Potent Inhibitors of Hydroxy Acid Oxidase 1 (HAO1) Using DNA-Encoded Chemical Library Screening. J.Med.Chem. (2021)
- Release Date
- 2021-05-12
- Peptides
- Hydroxyacid oxidase 1: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A