SMTL ID : 6wgw.1 (1 other biounit)

CYP101D1 D259E Hydroxycamphor bound

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.73 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 28 residues within 4Å: Chain A: Y.97, P.122, T.123, H.130, R.134, I.137, F.185, L.272, L.273, G.276, T.280, V.281, F.284, F.317, V.322, V.323, D.325, R.327, T.377, F.378, A.379, P.382, H.383, C.385, A.386, G.387, A.391 Ligands: CAH.2 21 PLIP interactions: 21 interactions with chain A, Hydrophobic interactions: A:T.123, A:I.137, A:F.185, A:L.273, A:V.281, A:F.284, A:F.317, A:V.322, A:V.323, A:V.323, A:T.377, A:A.386, A:A.391 Hydrogen bonds: A:D.325 Salt bridges: A:H.130, A:R.134, A:R.327, A:H.383, A:H.383 pi-Stacking: A:F.378 Metal complexes: A:C.385

1 x CAH: 5-EXO-HYDROXYCAMPHOR(Non-covalent)

CAH.2: 10 residues within 4Å: Chain A: W.109, Y.118, T.123, L.272, L.275, G.276, T.280, V.323, V.424 Ligands: HEM.1 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:W.109, A:T.123, A:L.272, A:L.275, A:T.280, A:V.323, A:V.323, A:V.424 Hydrogen bonds: A:Y.118

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 4 residues within 4Å: Chain A: E.334, F.335, H.336, G.337 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.336, A:G.337 SO4.4: 3 residues within 4Å: Chain A: D.362, P.363, M.364 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:M.364 Water bridges: A:K.65 SO4.5: 1 residues within 4Å: Chain A: Q.69 1 PLIP interactions: 1 interactions with chain A Water bridges: A:T.72 SO4.6: 1 residues within 4Å: Chain A: R.33 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.33

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Amaya, J.A. et al., Proton Relay Network in the Bacterial P450s: CYP101A1 and CYP101D1. Biochemistry (2020)

Release Date

2020-07-08

Peptides

Cytochrome P450 101D1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cytochrome P450 101D1

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