SMTL ID : 6wgx.2 (1 other biounit)

Cocrystal of BRD4(D1) with a selective inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.53 Å

Oligo State

monomer

Ligands

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 7 residues within 4Å: Chain A: I.59, I.60, K.61, T.62, T.90, N.94, I.97 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:I.59, A:K.61, A:T.62, A:T.62 Water bridges: A:T.62

1 x U0D: 4-(1-{1-[2-(dimethylamino)ethyl]piperidin-4-yl}-4-[4-(trifluoromethyl)phenyl]-1H-imidazol-5-yl)-N-(3,5-dimethylphenyl)pyrimidin-2-amine(Non-covalent)

U0D.2: 17 residues within 4Å: Chain A: W.40, P.41, F.42, V.46, L.51, N.52, L.53, Y.56, M.64, D.65, M.91, N.94, C.95, Y.98, N.99, D.104, I.105 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:W.40, A:F.42, A:V.46, A:L.51, A:L.53, A:Y.56 Hydrogen bonds: A:N.99

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cui, H. et al., Selective N-Terminal BET Bromodomain Inhibitors by Targeting Non-Conserved Residues and Structured Water Displacement*. Angew.Chem.Int.Ed.Engl. (2021)

Release Date

2020-10-07

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Bromodomain-containing protein 4

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