SMTL ID : 6wqs.1

Xanthomonas citri Methionyl-tRNA synthetase in complex with REP8839

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.164, C.167, C.177, C.180 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.164, A:C.167, A:C.177, A:C.180

1 x U7S: 2-{[3-({[4-bromo-5-(1-fluoroethenyl)-3-methylthiophen-2-yl]methyl}amino)propyl]amino}quinolin-4(1H)-one(Non-covalent)

U7S.2: 17 residues within 4Å: Chain A: A.31, L.32, Y.34, D.71, H.73, G.74, Y.258, F.271, Y.272, V.273, W.274, D.276, A.277, P.278, Y.281, I.316, F.319 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:Y.34, A:Y.34, A:H.73, A:Y.272, A:W.274, A:A.277, A:I.316 Hydrogen bonds: A:D.71, A:D.71 Water bridges: A:L.32, A:T.75

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mercaldi, G.F. et al., Molecular basis for diaryldiamine selectivity and competition with tRNA in a type 2 methionyl-tRNA synthetase from a Gram-negative bacterium. J.Biol.Chem. (2021)

Release Date

2021-04-21

Peptides

Methionine--tRNA ligase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Methionine--tRNA ligase

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