- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-3-18-18-mer
- Ligands
- 18 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 54 x CA: CALCIUM ION(Non-covalent)
CA.2: 5 residues within 4Å:- Chain V: D.151, E.154, E.222, L.224, V.225
4 PLIP interactions:4 interactions with chain V- Metal complexes: V:D.151, V:E.154, V:E.222, V:L.224
CA.3: 8 residues within 4Å:- Chain V: Q.177, D.179, E.180, K.183, D.228, V.229, D.231
- Chain W: D.301
5 PLIP interactions:4 interactions with chain V, 1 interactions with chain W- Metal complexes: V:D.228, V:D.228, V:D.231, V:D.231, W:D.301
CA.4: 5 residues within 4Å:- Chain V: G.206, C.207, T.214, E.216
- Chain W: D.95
3 PLIP interactions:2 interactions with chain V, 1 interactions with chain W- Metal complexes: V:G.206, V:T.214, W:D.95
CA.6: 5 residues within 4Å:- Chain W: D.151, E.154, E.222, L.224, V.225
4 PLIP interactions:4 interactions with chain W- Metal complexes: W:D.151, W:E.154, W:E.222, W:L.224
CA.7: 6 residues within 4Å:- Chain W: Q.177, E.180, D.228, V.229, D.231
- Chain X: D.301
5 PLIP interactions:4 interactions with chain W, 1 interactions with chain X- Metal complexes: W:D.228, W:D.228, W:V.229, W:D.231, X:D.301
CA.8: 4 residues within 4Å:- Chain W: G.206, T.214, E.216
- Chain X: D.95
3 PLIP interactions:2 interactions with chain W, 1 interactions with chain X- Metal complexes: W:G.206, W:E.216, X:D.95
CA.9: 6 residues within 4Å:- Chain V: D.301
- Chain X: Q.177, E.180, D.228, V.229, D.231
5 PLIP interactions:4 interactions with chain X, 1 interactions with chain V- Metal complexes: X:D.228, X:D.228, X:V.229, X:D.231, V:D.301
CA.10: 4 residues within 4Å:- Chain V: D.95
- Chain X: G.206, C.207, T.214
3 PLIP interactions:2 interactions with chain X, 1 interactions with chain V- Metal complexes: X:G.206, X:T.214, V:D.95
CA.12: 6 residues within 4Å:- Chain X: L.150, D.151, E.154, E.222, L.224, V.225
4 PLIP interactions:4 interactions with chain X- Metal complexes: X:D.151, X:E.154, X:E.222, X:L.224
CA.14: 5 residues within 4Å:- Chain Y: D.151, E.154, E.222, L.224, V.225
4 PLIP interactions:4 interactions with chain Y- Metal complexes: Y:D.151, Y:E.154, Y:E.222, Y:L.224
CA.15: 8 residues within 4Å:- Chain Y: Q.177, D.179, E.180, D.228, V.229, D.231
- Chain Z: D.301, Y.302
5 PLIP interactions:4 interactions with chain Y, 1 interactions with chain Z- Metal complexes: Y:D.228, Y:D.228, Y:D.231, Y:D.231, Z:D.301
CA.16: 5 residues within 4Å:- Chain Y: G.206, C.207, T.214, E.216
- Chain Z: D.95
3 PLIP interactions:2 interactions with chain Y, 1 interactions with chain Z- Metal complexes: Y:G.206, Y:T.214, Z:D.95
CA.18: 6 residues within 4Å:- Chain Z: L.150, D.151, E.154, E.222, L.224, V.225
4 PLIP interactions:4 interactions with chain Z- Metal complexes: Z:D.151, Z:E.154, Z:E.222, Z:L.224
CA.19: 7 residues within 4Å:- Chain 0: D.301
- Chain Z: Q.177, D.179, E.180, D.228, V.229, D.231
5 PLIP interactions:1 interactions with chain 0, 4 interactions with chain Z- Metal complexes: 0:D.301, Z:D.228, Z:D.228, Z:D.231, Z:D.231
CA.20: 5 residues within 4Å:- Chain 0: D.95
- Chain Z: G.206, C.207, T.214, E.216
3 PLIP interactions:1 interactions with chain 0, 2 interactions with chain Z- Metal complexes: 0:D.95, Z:G.206, Z:T.214
CA.21: 7 residues within 4Å:- Chain 0: Q.177, D.179, E.180, D.228, V.229, D.231
- Chain Y: D.301
5 PLIP interactions:1 interactions with chain Y, 4 interactions with chain 0- Metal complexes: Y:D.301, 0:D.228, 0:D.228, 0:D.231, 0:D.231
CA.22: 5 residues within 4Å:- Chain 0: G.206, C.207, T.214, E.216
- Chain Y: D.95
3 PLIP interactions:1 interactions with chain Y, 2 interactions with chain 0- Metal complexes: Y:D.95, 0:G.206, 0:T.214
CA.24: 6 residues within 4Å:- Chain 0: L.150, D.151, E.154, E.222, L.224, V.225
5 PLIP interactions:5 interactions with chain 0- Metal complexes: 0:D.151, 0:D.151, 0:E.154, 0:E.222, 0:L.224
CA.26: 6 residues within 4Å:- Chain 1: L.150, D.151, E.154, E.222, L.224, V.225
4 PLIP interactions:4 interactions with chain 1- Metal complexes: 1:D.151, 1:E.154, 1:E.222, 1:L.224
CA.27: 6 residues within 4Å:- Chain 1: Q.177, E.180, D.228, V.229, D.231
- Chain 2: D.301
5 PLIP interactions:4 interactions with chain 1, 1 interactions with chain 2- Metal complexes: 1:D.228, 1:V.229, 1:D.231, 1:D.231, 2:D.301
CA.28: 4 residues within 4Å:- Chain 1: G.206, T.214, E.216
- Chain 2: D.95
1 PLIP interactions:1 interactions with chain 2- Metal complexes: 2:D.95
CA.30: 6 residues within 4Å:- Chain 2: L.150, D.151, E.154, E.222, L.224, V.225
4 PLIP interactions:4 interactions with chain 2- Metal complexes: 2:D.151, 2:E.154, 2:E.222, 2:L.224
CA.31: 6 residues within 4Å:- Chain 2: Q.177, E.180, D.228, V.229, D.231
- Chain 3: D.301
5 PLIP interactions:4 interactions with chain 2, 1 interactions with chain 3- Metal complexes: 2:D.228, 2:D.228, 2:D.231, 2:D.231, 3:D.301
CA.32: 5 residues within 4Å:- Chain 2: G.206, T.214, F.215, E.216
- Chain 3: D.95
2 PLIP interactions:1 interactions with chain 2, 1 interactions with chain 3- Metal complexes: 2:T.214, 3:D.95
CA.33: 7 residues within 4Å:- Chain 1: D.301
- Chain 3: Q.177, E.180, K.183, D.228, V.229, D.231
5 PLIP interactions:4 interactions with chain 3, 1 interactions with chain 1- Metal complexes: 3:D.228, 3:D.228, 3:V.229, 3:D.231, 1:D.301
CA.34: 5 residues within 4Å:- Chain 1: D.95
- Chain 3: G.206, C.207, T.214, E.216
4 PLIP interactions:3 interactions with chain 3, 1 interactions with chain 1- Metal complexes: 3:G.206, 3:T.214, 3:E.216, 1:D.95
CA.36: 6 residues within 4Å:- Chain 3: L.150, D.151, E.154, E.222, L.224, V.225
4 PLIP interactions:4 interactions with chain 3- Metal complexes: 3:D.151, 3:E.154, 3:E.222, 3:L.224
CA.38: 6 residues within 4Å:- Chain 4: L.150, D.151, E.154, E.222, L.224, V.225
4 PLIP interactions:4 interactions with chain 4- Metal complexes: 4:D.151, 4:E.154, 4:E.222, 4:L.224
CA.39: 7 residues within 4Å:- Chain 4: Q.177, D.179, E.180, D.228, V.229, D.231
- Chain 5: D.301
5 PLIP interactions:4 interactions with chain 4, 1 interactions with chain 5- Metal complexes: 4:D.228, 4:D.228, 4:D.231, 4:D.231, 5:D.301
CA.40: 4 residues within 4Å:- Chain 4: G.206, T.214, E.216
- Chain 5: D.95
2 PLIP interactions:1 interactions with chain 5, 1 interactions with chain 4- Metal complexes: 5:D.95, 4:G.206
CA.42: 6 residues within 4Å:- Chain 5: L.150, D.151, E.154, E.222, L.224, V.225
4 PLIP interactions:4 interactions with chain 5- Metal complexes: 5:D.151, 5:E.154, 5:E.222, 5:L.224
CA.43: 7 residues within 4Å:- Chain 5: Q.177, D.179, E.180, D.228, V.229, D.231
- Chain 6: D.301
5 PLIP interactions:4 interactions with chain 5, 1 interactions with chain 6- Metal complexes: 5:D.228, 5:D.228, 5:D.231, 5:D.231, 6:D.301
CA.44: 5 residues within 4Å:- Chain 5: G.206, C.207, T.214, E.216
- Chain 6: D.95
3 PLIP interactions:2 interactions with chain 5, 1 interactions with chain 6- Metal complexes: 5:G.206, 5:T.214, 6:D.95
CA.45: 6 residues within 4Å:- Chain 4: D.301
- Chain 6: Q.177, E.180, D.228, V.229, D.231
5 PLIP interactions:4 interactions with chain 6, 1 interactions with chain 4- Metal complexes: 6:D.228, 6:V.229, 6:D.231, 6:D.231, 4:D.301
CA.46: 4 residues within 4Å:- Chain 4: D.95
- Chain 6: G.206, C.207, T.214
3 PLIP interactions:1 interactions with chain 4, 2 interactions with chain 6- Metal complexes: 4:D.95, 6:G.206, 6:T.214
CA.48: 6 residues within 4Å:- Chain 6: L.150, D.151, E.154, E.222, L.224, V.225
4 PLIP interactions:4 interactions with chain 6- Metal complexes: 6:D.151, 6:E.154, 6:E.222, 6:L.224
CA.50: 6 residues within 4Å:- Chain 7: L.150, D.151, E.154, E.222, L.224, V.225
4 PLIP interactions:4 interactions with chain 7- Metal complexes: 7:D.151, 7:E.154, 7:E.222, 7:L.224
CA.51: 7 residues within 4Å:- Chain 7: Q.177, E.180, K.183, D.228, V.229, D.231
- Chain 8: D.301
5 PLIP interactions:5 interactions with chain 7- Metal complexes: 7:D.228, 7:D.228, 7:V.229, 7:D.231, 7:D.231
CA.52: 5 residues within 4Å:- Chain 7: G.206, C.207, T.214, E.216
- Chain 8: D.95
3 PLIP interactions:2 interactions with chain 7, 1 interactions with chain 8- Metal complexes: 7:G.206, 7:T.214, 8:D.95
CA.54: 6 residues within 4Å:- Chain 8: L.150, D.151, E.154, E.222, L.224, V.225
4 PLIP interactions:4 interactions with chain 8- Metal complexes: 8:D.151, 8:E.154, 8:E.222, 8:L.224
CA.55: 8 residues within 4Å:- Chain 8: Q.177, E.180, N.182, K.183, D.228, V.229, D.231
- Chain 9: D.301
5 PLIP interactions:4 interactions with chain 8, 1 interactions with chain 9- Metal complexes: 8:D.228, 8:D.228, 8:D.231, 8:D.231, 9:D.301
CA.56: 5 residues within 4Å:- Chain 8: G.206, C.207, T.214, E.216
- Chain 9: D.95
4 PLIP interactions:1 interactions with chain 9, 3 interactions with chain 8- Metal complexes: 9:D.95, 8:G.206, 8:T.214, 8:E.216
CA.57: 7 residues within 4Å:- Chain 7: D.301
- Chain 9: Q.177, D.179, E.180, D.228, V.229, D.231
5 PLIP interactions:4 interactions with chain 9, 1 interactions with chain 7- Metal complexes: 9:D.228, 9:D.228, 9:D.231, 9:D.231, 7:D.301
CA.58: 5 residues within 4Å:- Chain 7: D.95
- Chain 9: G.206, C.207, T.214, E.216
3 PLIP interactions:2 interactions with chain 9, 1 interactions with chain 7- Metal complexes: 9:G.206, 9:T.214, 7:D.95
CA.60: 7 residues within 4Å:- Chain 7: K.290
- Chain 9: L.150, D.151, E.154, E.222, L.224, V.225
4 PLIP interactions:4 interactions with chain 9- Metal complexes: 9:D.151, 9:E.154, 9:E.222, 9:L.224
CA.62: 6 residues within 4Å:- Chain a: L.150, D.151, E.154, E.222, L.224, V.225
4 PLIP interactions:4 interactions with chain a- Metal complexes: a:D.151, a:E.154, a:E.222, a:L.224
CA.63: 6 residues within 4Å:- Chain a: Q.177, E.180, D.228, V.229, D.231
- Chain b: D.301
5 PLIP interactions:4 interactions with chain a, 1 interactions with chain b- Metal complexes: a:D.228, a:D.228, a:V.229, a:D.231, b:D.301
CA.64: 4 residues within 4Å:- Chain a: G.206, T.214, E.216
- Chain b: D.95
3 PLIP interactions:2 interactions with chain a, 1 interactions with chain b- Metal complexes: a:G.206, a:T.214, b:D.95
CA.66: 6 residues within 4Å:- Chain b: L.150, D.151, E.154, E.222, L.224, V.225
4 PLIP interactions:4 interactions with chain b- Metal complexes: b:D.151, b:E.154, b:E.222, b:L.224
CA.67: 5 residues within 4Å:- Chain b: Q.177, D.228, V.229, D.231
- Chain c: D.301
5 PLIP interactions:4 interactions with chain b, 1 interactions with chain c- Metal complexes: b:D.228, b:V.229, b:D.231, b:D.231, c:D.301
CA.68: 5 residues within 4Å:- Chain b: G.206, C.207, T.214, E.216
- Chain c: D.95
2 PLIP interactions:1 interactions with chain c, 1 interactions with chain b- Metal complexes: c:D.95, b:G.206
CA.69: 7 residues within 4Å:- Chain a: D.301
- Chain c: Q.177, D.179, E.180, D.228, V.229, D.231
5 PLIP interactions:1 interactions with chain a, 4 interactions with chain c- Metal complexes: a:D.301, c:D.228, c:D.228, c:D.231, c:D.231
CA.70: 5 residues within 4Å:- Chain a: D.95
- Chain c: G.206, C.207, T.214, E.216
3 PLIP interactions:2 interactions with chain c, 1 interactions with chain a- Metal complexes: c:T.214, c:E.216, a:D.95
CA.72: 6 residues within 4Å:- Chain c: L.150, D.151, E.154, E.222, L.224, V.225
4 PLIP interactions:4 interactions with chain c- Metal complexes: c:D.151, c:E.154, c:E.222, c:L.224
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Herrmann, T. et al., Functional refolding of the penetration protein on a non-enveloped virus. Nature (2021)
- Release Date
- 2021-01-20
- Peptides
- Outer capsid protein VP4: ABC
Intermediate capsid protein VP6: DEFGHIJKLMNOPQRSTU
Outer capsid glycoprotein VP7: VWXYZ0123456789abc - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
1B
2C
3D
AE
BF
CG
DH
EI
FJ
GK
HL
IM
JN
KO
LP
MQ
NR
OS
PT
QU
RV
aW
bX
cY
dZ
e0
f1
g2
h3
i4
j5
k6
l7
m8
n9
oa
pb
qc
r
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-3-18-18-mer
- Ligands
- 18 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 54 x CA: CALCIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Herrmann, T. et al., Functional refolding of the penetration protein on a non-enveloped virus. Nature (2021)
- Release Date
- 2021-01-20
- Peptides
- Outer capsid protein VP4: ABC
Intermediate capsid protein VP6: DEFGHIJKLMNOPQRSTU
Outer capsid glycoprotein VP7: VWXYZ0123456789abc - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
1B
2C
3D
AE
BF
CG
DH
EI
FJ
GK
HL
IM
JN
KO
LP
MQ
NR
OS
PT
QU
RV
aW
bX
cY
dZ
e0
f1
g2
h3
i4
j5
k6
l7
m8
n9
oa
pb
qc
r