- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-trimer
- Ligands
- 9 x NA: SODIUM ION(Non-functional Binders)
- 3 x ASP: ASPARTIC ACID(Non-covalent)
ASP.4: 13 residues within 4Å:- Chain A: R.276, S.277, S.278, T.314, T.352, G.354, V.355, A.358, G.359, D.394, R.397, T.398, N.401
10 PLIP interactions:2 Ligand-Ligand interactions, 8 interactions with chain A- Hydrogen bonds: D.4, D.4, A:S.278, A:T.314, A:V.355, A:A.358, A:G.359, A:D.394, A:N.401
- Salt bridges: A:R.397
ASP.23: 13 residues within 4Å:- Chain B: R.276, S.277, S.278, T.314, T.352, G.354, V.355, A.358, G.359, D.394, R.397, T.398, N.401
10 PLIP interactions:8 interactions with chain B, 2 Ligand-Ligand interactions- Hydrogen bonds: B:S.278, B:T.314, B:V.355, B:A.358, B:G.359, B:D.394, B:N.401, D.23, D.23
- Salt bridges: B:R.397
ASP.41: 13 residues within 4Å:- Chain C: R.276, S.277, S.278, T.314, T.352, G.354, V.355, A.358, G.359, D.394, R.397, T.398, N.401
10 PLIP interactions:8 interactions with chain C, 2 Ligand-Ligand interactions- Hydrogen bonds: C:S.278, C:T.314, C:V.355, C:A.358, C:G.359, C:D.394, C:N.401, D.41, D.41
- Salt bridges: C:R.397
- 3 x HG: MERCURY (II) ION(Non-covalent)
HG.5: 5 residues within 4Å:- Chain A: L.54, C.55, A.360, C.364, Y.383
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:C.364, A:Y.383
HG.24: 5 residues within 4Å:- Chain B: L.54, C.55, A.360, C.364, Y.383
2 PLIP interactions:2 interactions with chain B- Metal complexes: B:C.364, B:Y.383
HG.42: 5 residues within 4Å:- Chain C: L.54, C.55, A.360, C.364, Y.383
2 PLIP interactions:2 interactions with chain C- Metal complexes: C:C.364, C:Y.383
- 39 x 6OU: [(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate(Non-covalent)(Non-functional Binders)
6OU.6: 14 residues within 4Å:- Chain A: L.3, Y.4, Y.7, I.8, F.46, L.49, L.53, K.196, N.199, G.200, I.207
- Chain B: Y.167
- Ligands: 6OU.13, 6OU.26
12 PLIP interactions:12 interactions with chain A- Hydrophobic interactions: A:Y.4, A:Y.4, A:Y.7, A:Y.7, A:Y.7, A:F.46, A:L.49, A:L.53
- Hydrogen bonds: A:K.196, A:K.196
- Salt bridges: A:K.196, A:K.196
6OU.7: 11 residues within 4Å:- Chain A: P.75, I.137, L.152, I.155, I.159, I.163, Y.167
- Chain C: M.1, Y.4
- Ligands: 6OU.9, 6OU.43
9 PLIP interactions:9 interactions with chain A- Hydrophobic interactions: A:P.75, A:I.137, A:L.152, A:I.155, A:I.159, A:I.159, A:I.163, A:I.163
- Hydrogen bonds: A:Y.167
6OU.8: 13 residues within 4Å:- Chain A: A.127, L.130, I.133, L.152, T.334, V.335, G.336, Q.337, L.339, T.340, L.343, S.369, V.370
8 PLIP interactions:8 interactions with chain A- Hydrophobic interactions: A:L.130, A:I.133, A:T.340, A:L.343, A:L.343
- Hydrogen bonds: A:T.334, A:Q.337, A:T.340
6OU.9: 4 residues within 4Å:- Chain A: I.73, V.86, I.163
- Ligands: 6OU.7
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:I.73, A:V.86, A:I.163
6OU.10: 5 residues within 4Å:- Chain A: K.6, K.15, I.18, G.19
- Ligands: 6OU.13
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:K.6, A:K.15
6OU.11: 5 residues within 4Å:- Chain A: K.84, L.91, F.95, L.250, Y.254
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:L.91, A:L.91, A:F.95, A:L.250
6OU.12: 3 residues within 4Å:- Chain A: L.250, I.253, Y.254
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:L.250, A:I.253
6OU.13: 2 residues within 4Å:- Ligands: 6OU.6, 6OU.10
No protein-ligand interaction detected (PLIP)6OU.14: 6 residues within 4Å:- Chain A: I.262, K.263, M.269, L.270, M.399
- Ligands: 6OU.15
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:I.262, A:L.270
6OU.15: 2 residues within 4Å:- Chain A: I.259
- Ligands: 6OU.14
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:I.259
6OU.16: 3 residues within 4Å:- Chain A: L.90, L.91, A.94
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:L.90, A:L.91, A:A.94
6OU.17: 3 residues within 4Å:- Chain A: V.43, F.46, F.210
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:V.43, A:F.46, A:F.46, A:F.210
6OU.18: 5 residues within 4Å:- Chain A: V.131, L.134
- Chain C: Y.42, P.45, F.46
2 PLIP interactions:2 interactions with chain C- Hydrophobic interactions: C:Y.42, C:F.46
6OU.19: 5 residues within 4Å:- Chain A: Y.42, P.45, F.46
- Chain B: V.131, L.134
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:Y.42, A:F.46
6OU.25: 15 residues within 4Å:- Chain B: L.3, Y.4, Y.7, I.8, F.46, L.49, L.53, K.196, N.199, G.200, I.207
- Chain C: I.163, Y.167
- Ligands: 6OU.32, 6OU.44
13 PLIP interactions:1 interactions with chain C, 12 interactions with chain B- Hydrophobic interactions: C:I.163, B:Y.4, B:Y.4, B:Y.7, B:Y.7, B:Y.7, B:F.46, B:L.49, B:L.53
- Hydrogen bonds: B:K.196, B:K.196
- Salt bridges: B:K.196, B:K.196
6OU.26: 11 residues within 4Å:- Chain A: M.1, Y.4
- Chain B: P.75, I.137, L.152, I.155, I.159, I.163, Y.167
- Ligands: 6OU.6, 6OU.28
9 PLIP interactions:9 interactions with chain B- Hydrophobic interactions: B:P.75, B:I.137, B:L.152, B:I.155, B:I.159, B:I.159, B:I.163, B:I.163
- Hydrogen bonds: B:Y.167
6OU.27: 13 residues within 4Å:- Chain B: A.127, L.130, I.133, L.152, T.334, V.335, G.336, Q.337, L.339, T.340, L.343, S.369, V.370
8 PLIP interactions:8 interactions with chain B- Hydrophobic interactions: B:L.130, B:I.133, B:T.340, B:L.343, B:L.343
- Hydrogen bonds: B:T.334, B:Q.337, B:T.340
6OU.28: 4 residues within 4Å:- Chain B: I.73, V.86, I.163
- Ligands: 6OU.26
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:I.73, B:V.86, B:I.163
6OU.29: 5 residues within 4Å:- Chain B: K.6, K.15, I.18, G.19
- Ligands: 6OU.32
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:K.6, B:K.15
6OU.30: 5 residues within 4Å:- Chain B: K.84, L.91, F.95, L.250, Y.254
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:L.91, B:L.91, B:F.95, B:L.250
6OU.31: 3 residues within 4Å:- Chain B: L.250, I.253, Y.254
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:L.250, B:I.253
6OU.32: 2 residues within 4Å:- Ligands: 6OU.25, 6OU.29
No protein-ligand interaction detected (PLIP)6OU.33: 6 residues within 4Å:- Chain B: I.262, K.263, M.269, L.270, M.399
- Ligands: 6OU.34
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:I.262, B:L.270
6OU.34: 2 residues within 4Å:- Chain B: I.259
- Ligands: 6OU.33
1 PLIP interactions:1 interactions with chain B- Hydrophobic interactions: B:I.259
6OU.35: 3 residues within 4Å:- Chain B: L.90, L.91, A.94
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:L.90, B:L.91, B:A.94
6OU.36: 3 residues within 4Å:- Chain B: V.43, F.46, F.210
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:V.43, B:F.46, B:F.46, B:F.210
6OU.37: 5 residues within 4Å:- Chain B: Y.42, P.45, F.46
- Chain C: V.131, L.134
4 PLIP interactions:2 interactions with chain B, 2 interactions with chain C- Hydrophobic interactions: B:Y.42, B:F.46, C:V.131, C:L.134
6OU.43: 15 residues within 4Å:- Chain A: I.163, Y.167
- Chain C: L.3, Y.4, Y.7, I.8, F.46, L.49, L.53, K.196, N.199, G.200, I.207
- Ligands: 6OU.7, 6OU.50
13 PLIP interactions:12 interactions with chain C, 1 interactions with chain A- Hydrophobic interactions: C:Y.4, C:Y.4, C:Y.7, C:Y.7, C:Y.7, C:F.46, C:L.49, C:L.53, A:I.163
- Hydrogen bonds: C:K.196, C:K.196
- Salt bridges: C:K.196, C:K.196
6OU.44: 11 residues within 4Å:- Chain B: M.1, Y.4
- Chain C: P.75, I.137, L.152, I.155, I.159, I.163, Y.167
- Ligands: 6OU.25, 6OU.46
9 PLIP interactions:9 interactions with chain C- Hydrophobic interactions: C:P.75, C:I.137, C:L.152, C:I.155, C:I.159, C:I.159, C:I.163, C:I.163
- Hydrogen bonds: C:Y.167
6OU.45: 13 residues within 4Å:- Chain C: A.127, L.130, I.133, L.152, T.334, V.335, G.336, Q.337, L.339, T.340, L.343, S.369, V.370
8 PLIP interactions:8 interactions with chain C- Hydrophobic interactions: C:L.130, C:I.133, C:T.340, C:L.343, C:L.343
- Hydrogen bonds: C:T.334, C:Q.337, C:T.340
6OU.46: 4 residues within 4Å:- Chain C: I.73, V.86, I.163
- Ligands: 6OU.44
3 PLIP interactions:3 interactions with chain C- Hydrophobic interactions: C:I.73, C:V.86, C:I.163
6OU.47: 5 residues within 4Å:- Chain C: K.6, K.15, I.18, G.19
- Ligands: 6OU.50
2 PLIP interactions:2 interactions with chain C- Hydrophobic interactions: C:K.6, C:K.15
6OU.48: 5 residues within 4Å:- Chain C: K.84, L.91, F.95, L.250, Y.254
4 PLIP interactions:4 interactions with chain C- Hydrophobic interactions: C:L.91, C:L.91, C:F.95, C:L.250
6OU.49: 3 residues within 4Å:- Chain C: L.250, I.253, Y.254
2 PLIP interactions:2 interactions with chain C- Hydrophobic interactions: C:L.250, C:I.253
6OU.50: 2 residues within 4Å:- Ligands: 6OU.43, 6OU.47
No protein-ligand interaction detected (PLIP)6OU.51: 6 residues within 4Å:- Chain C: I.262, K.263, M.269, L.270, M.399
- Ligands: 6OU.52
2 PLIP interactions:2 interactions with chain C- Hydrophobic interactions: C:I.262, C:L.270
6OU.52: 2 residues within 4Å:- Chain C: I.259
- Ligands: 6OU.51
1 PLIP interactions:1 interactions with chain C- Hydrophobic interactions: C:I.259
6OU.53: 3 residues within 4Å:- Chain C: L.90, L.91, A.94
3 PLIP interactions:3 interactions with chain C- Hydrophobic interactions: C:L.90, C:L.91, C:A.94
6OU.54: 3 residues within 4Å:- Chain C: V.43, F.46, F.210
4 PLIP interactions:4 interactions with chain C- Hydrophobic interactions: C:V.43, C:F.46, C:F.46, C:F.210
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wang, X. et al., Large domain movements through the lipid bilayer mediate substrate release and inhibition of glutamate transporters. Elife (2020)
- Release Date
- 2020-11-18
- Peptides
- Glutamate transporter homologue GltPh: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-trimer
- Ligands
- 9 x NA: SODIUM ION(Non-functional Binders)
- 3 x ASP: ASPARTIC ACID(Non-covalent)
- 3 x HG: MERCURY (II) ION(Non-covalent)
- 39 x 6OU: [(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate(Non-covalent)(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wang, X. et al., Large domain movements through the lipid bilayer mediate substrate release and inhibition of glutamate transporters. Elife (2020)
- Release Date
- 2020-11-18
- Peptides
- Glutamate transporter homologue GltPh: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C - Membrane
-
We predict this structure to be a membrane protein.