SMTL ID : 6x1y.1

Mre11 dimer in complex with small molecule modulator PFMI

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

homo-dimer

Ligands

2 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.1: 10 residues within 4Å: Chain A: D.26, H.28, D.70, L.72, H.73, R.75, N.105, E.205, H.228, H.230 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.26 Salt bridges: A:H.28, A:D.70, A:H.228, A:H.230 MES.3: 10 residues within 4Å: Chain B: H.28, D.70, L.72, H.73, R.75, N.105, E.205, H.228, H.230 Ligands: UKV.4 4 PLIP interactions: 4 interactions with chain B Salt bridges: B:H.28, B:D.70, B:H.228, B:H.230

2 x UKV: (5Z)-5-[(3-methoxyphenyl)methylidene]-2-sulfanylidene-1,3-thiazolidin-4-one(Non-covalent)

UKV.2: 12 residues within 4Å: Chain A: G.69, D.70, L.71, L.72, L.86, P.103, G.104, H.106, W.108, L.111, F.114, F.127 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.86, A:F.114, A:F.127, A:F.127 Hydrogen bonds: A:D.70, A:L.71, A:G.104 UKV.4: 14 residues within 4Å: Chain B: G.69, D.70, L.71, L.72, L.83, L.86, P.103, G.104, H.106, W.108, L.111, F.114, F.127 Ligands: MES.3 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:L.72, B:L.86, B:L.111, B:F.114, B:F.127, B:F.127 Hydrogen bonds: B:D.70, B:L.71, B:G.104

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wilson 3rd, D.M. et al., Fragment- and structure-based drug discovery for developing therapeutic agents targeting the DNA Damage Response. Prog.Biophys.Mol.Biol. (2021)

Release Date

2020-06-10

Peptides

Nuclease SbcCD subunit D: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Nuclease SbcCD subunit D

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