SMTL ID : 6x5u.1 (3 other biounits)

Human Alpha-1,6-fucosyltransferase (FUT8) bound to GDP and NM5M2-Asn

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

homo-dimer

Ligands

1 x NAG- NAG- BMA- MAN- NAG- MAN: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-NAG-MAN.1: 20 residues within 4Å: Chain A: K.176, C.178, C.182, I.253, V.254, D.255, K.329, E.333, S.428, Q.430, D.454, D.455, Y.458, G.460, A.492, G.493, N.494, H.495, K.501 Ligands: ASN.4 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:A.492, A:D.454, A:D.455, A:N.494, A:H.495 Water bridges: A:I.456

1 x NAG- BMA- MAN- NAG- MAN: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-BMA-MAN-NAG-MAN.2: 16 residues within 4Å: Chain B: K.176, V.254, D.255, E.333, S.428, Q.430, D.454, D.455, Y.458, G.460, Q.462, V.491, A.492, G.493, N.494, H.495 4 PLIP interactions: 4 interactions with chain B Water bridges: B:Q.462, B:N.494, B:W.496 Hydrogen bonds: B:Q.462, B:V.491, B:D.455, B:H.495

2 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.3: 22 residues within 4Å: Chain A: G.179, Y.180, G.181, C.182, Y.210, H.323, R.325, K.329, E.333, A.367, T.368, D.369, I.392, A.396, R.401, G.409, V.410, D.413, S.428, S.429, Q.430, V.431 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:G.179, A:Y.180, A:G.181, A:C.182, A:H.323, A:E.333, A:G.409, A:Q.430, A:V.431 Salt bridges: A:R.325, A:K.329, A:D.413 GDP.5: 22 residues within 4Å: Chain B: G.179, Y.180, G.181, C.182, Y.210, H.323, R.325, K.329, E.333, A.367, T.368, D.369, I.392, A.396, R.401, G.409, V.410, D.413, S.428, S.429, Q.430, V.431 13 PLIP interactions: 13 interactions with chain B Hydrogen bonds: B:G.179, B:Y.180, B:G.181, B:C.182, B:Y.210, B:Y.210, B:E.333, B:G.409, B:Q.430, B:V.431 Salt bridges: B:R.325, B:K.329, B:D.413

1 x ASN: ASPARAGINE(Non-covalent)

ASN.4: 2 residues within 4Å: Chain A: G.177 Ligands: NAG-NAG-BMA-MAN-NAG-MAN.1 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Boruah, B.M. et al., Characterizing human alpha-1,6-fucosyltransferase (FUT8) substrate specificity and structural similarities with related fucosyltransferases. J.Biol.Chem. (2020)

Release Date

2020-10-07

Peptides

Alpha-(1,6)-fucosyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Alpha-(1,6)-fucosyltransferase

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