SMTL ID : 6xte.1

Human karyopherin RanBP5 (isoform-1)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.27 Å

Oligo State

monomer

Ligands

1 x FC0- ARG- VAL- RGL: Antipain(Non-covalent)

FC0-ARG-VAL-RGL.1: 13 residues within 4Å: Chain A: Y.836, K.840, W.882, C.885, Q.922, A.923, Y.926, N.966, N.970, D.1004, K.1005, E.1006, E.1007 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:Y.926 Hydrogen bonds: A:Q.922, A:N.970, A:N.970, A:K.1005 Water bridges: A:A.923, A:Y.926 Salt bridges: A:D.1004, A:D.1004, A:E.1006, A:E.1006, A:E.1007

2 x NI: NICKEL (II) ION(Non-covalent)

NI.2: 5 residues within 4Å: Chain A: H.746, C.749, C.783, N.785, H.788 No protein-ligand interaction detected (PLIP) NI.3: 3 residues within 4Å: Chain A: Q.955, H.994, W.998 No protein-ligand interaction detected (PLIP)

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 2 residues within 4Å: Chain A: H.375, R.413 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Swale, C. et al., X-ray Structure of the Human Karyopherin RanBP5, an Essential Factor for Influenza Polymerase Nuclear Trafficking. J.Mol.Biol. (2020)

Release Date

2020-04-22

Peptides

Importin-5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Importin-5