SMTL ID : 6xy9.1

Crystal structure of haloalkane dehalogenase DbeA-M1 loop variant from Bradyrhizobium elkanii

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 6 residues within 4Å: Chain A: N.34, W.100, F.153, F.172, L.209, P.210 Ligand excluded by PLIP CL.2: 6 residues within 4Å: Chain A: H.32, G.33, T.36, I.40, Q.98, Q.279 Ligand excluded by PLIP CL.4: 6 residues within 4Å: Chain B: N.34, W.100, F.153, F.172, L.209, P.210 Ligand excluded by PLIP CL.5: 6 residues within 4Å: Chain B: H.32, G.33, T.36, Q.98, Y.277, Q.279 Ligand excluded by PLIP

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 5 residues within 4Å: Chain A: D.281, H.282, P.283, E.284, A.285 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.284, A:A.285 ACT.6: 4 residues within 4Å: Chain B: H.282, P.283, E.284, A.285 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.284, B:A.285

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Marek, M. et al., Structural and catalytic effects of surface loop-helix transplantation within haloalkane dehalogenase family. Comput Struct Biotechnol J (2020)

Release Date

2020-07-22

Peptides

Haloalkane dehalogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Haloalkane dehalogenase