SMTL ID : 6y5i.1

Dilated form 1 of X-31 Influenza Haemagglutinin at pH 5 (State II)

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-mer

Ligands

3 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 3 residues within 4Å: Chain A: N.158, V.237 Chain E: W.215 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:W.215 NAG-NAG-BMA.6: 4 residues within 4Å: Chain E: N.158, T.160, V.235, V.237 1 PLIP interactions: 1 interactions with chain E Hydrophobic interactions: E:V.235 NAG-NAG-BMA.8: 3 residues within 4Å: Chain A: P.214, W.215 Chain F: N.158 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:W.215

6 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 4 residues within 4Å: Chain A: N.278, V.290, N.291 Chain B: E.69 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 5 residues within 4Å: Chain B: A.147, E.150, S.151, N.154, T.156 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 5 residues within 4Å: Chain C: A.147, E.150, S.151, N.154, T.156 No protein-ligand interaction detected (PLIP) NAG-NAG.5: 5 residues within 4Å: Chain D: A.147, E.150, S.151, N.154, T.156 No protein-ligand interaction detected (PLIP) NAG-NAG.7: 5 residues within 4Å: Chain D: E.69 Chain E: S.38, N.278, V.290, N.291 No protein-ligand interaction detected (PLIP) NAG-NAG.9: 4 residues within 4Å: Chain C: E.69 Chain F: N.278, V.290, N.291 No protein-ligand interaction detected (PLIP)

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.10: 2 residues within 4Å: Chain A: N.31, T.311 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.31 NAG.11: 4 residues within 4Å: Chain A: Q.73, N.74, E.112, I.114 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.74, A:E.112 NAG.12: 2 residues within 4Å: Chain E: N.31, T.311 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:N.31 NAG.13: 4 residues within 4Å: Chain E: Q.73, N.74, E.112, I.114 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:N.74, E:E.112 NAG.14: 2 residues within 4Å: Chain F: N.31, T.311 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:N.31 NAG.15: 4 residues within 4Å: Chain F: Q.73, N.74, E.112, I.114 2 PLIP interactions: 2 interactions with chain F Hydrogen bonds: F:N.74, F:E.112

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Benton, D.J. et al., Structural transitions in influenza haemagglutinin at membrane fusion pH. Nature (2020)

Release Date

2020-06-10

Peptides

X-31 Influenza Haemagglutinin HA1: AEF
X-31 Influenza Haemagglutinin HA2: BCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
E

F
C

B
B

C
D

D
F

X-31 Influenza Haemagglutinin HA1

X-31 Influenza Haemagglutinin HA2

Related Entries With Identical Sequence