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SMTL ID : 6ybb.1
Crystal structure of a native BcsE (217-523) - BcsR-BcsQ (R156E mutant) complex with c-di-GMP and ATP bound
Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.90 Å
Oligo State
hetero-2-2-2-mer
Ligands
2 x
MG
:
MAGNESIUM ION
(Non-covalent)
MG.1:
3 residues within 4Å:
Chain A:
T.16
,
L.43
Ligands:
ATP.2
3
PLIP interactions
:
1 interactions with chain A
,
2 Ligand-Water interactions
Metal complexes:
A:T.16
,
H
2
O.1
,
H
2
O.1
MG.3:
2 residues within 4Å:
Chain B:
T.16
Ligands:
ATP.4
3
PLIP interactions
:
1 interactions with chain B
,
2 Ligand-Water interactions
Metal complexes:
B:T.16
,
H
2
O.1
,
H
2
O.1
2 x
ATP
:
ADENOSINE-5'-TRIPHOSPHATE
(Non-covalent)
ATP.2:
20 residues within 4Å:
Chain A:
G.11
,
G.12
,
V.13
,
G.14
,
T.15
,
T.16
,
T.17
,
D.41
,
L.43
,
N.171
,
N.172
,
H.200
,
R.201
,
D.202
,
M.205
,
A.206
Chain B:
D.150
,
A.151
,
N.152
Ligands:
MG.1
19
PLIP interactions
:
15 interactions with chain A
,
4 interactions with chain B
Hydrogen bonds:
A:G.12
,
A:V.13
,
A:G.14
,
A:G.14
,
A:T.15
,
A:T.15
,
A:T.16
,
A:T.17
,
A:T.17
,
A:T.17
,
A:N.171
,
A:N.171
,
A:N.172
,
A:N.172
,
A:D.202
,
B:D.150
,
B:A.151
,
B:N.152
,
B:N.152
ATP.4:
20 residues within 4Å:
Chain A:
R.10
,
D.150
,
A.151
,
N.152
Chain B:
G.11
,
G.12
,
V.13
,
G.14
,
T.15
,
T.16
,
T.17
,
L.43
,
N.171
,
N.172
,
H.200
,
R.201
,
D.202
,
M.205
,
A.206
Ligands:
MG.3
23
PLIP interactions
:
4 interactions with chain A
,
19 interactions with chain B
Hydrogen bonds:
A:D.150
,
A:A.151
,
A:N.152
,
A:N.152
,
B:G.12
,
B:V.13
,
B:G.14
,
B:T.15
,
B:T.15
,
B:T.16
,
B:T.17
,
B:T.17
,
B:T.17
,
B:D.41
,
B:N.171
,
B:N.172
,
B:N.172
,
B:H.200
,
B:D.202
Water bridges:
B:T.16
,
B:D.124
,
B:D.124
,
B:D.124
4 x
C2E
:
9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)
(Non-covalent)
C2E.5:
11 residues within 4Å:
Chain E:
A.90
,
S.91
,
L.92
,
R.93
,
N.201
,
R.202
,
D.205
,
T.228
,
A.229
,
H.232
Ligands:
C2E.6
9
PLIP interactions
:
9 interactions with chain E
Hydrogen bonds:
E:L.92
,
E:R.93
,
E:N.201
,
E:D.225
Water bridges:
E:R.202
Salt bridges:
E:R.202
,
E:D.205
pi-Stacking:
E:H.232
pi-Cation interactions:
E:R.202
C2E.6:
7 residues within 4Å:
Chain E:
N.60
,
R.93
,
D.96
,
N.201
,
R.202
,
T.203
Ligands:
C2E.5
10
PLIP interactions
:
10 interactions with chain E
Hydrogen bonds:
E:N.60
,
E:R.93
,
E:R.93
,
E:R.202
,
E:T.203
Water bridges:
E:R.93
,
E:R.93
Salt bridges:
E:R.93
,
E:D.96
pi-Cation interactions:
E:R.93
C2E.8:
14 residues within 4Å:
Chain F:
S.91
,
L.92
,
R.93
,
A.94
,
R.202
,
D.205
,
L.218
,
S.219
,
F.220
,
C.221
,
D.225
,
A.229
,
H.232
Ligands:
C2E.9
10
PLIP interactions
:
10 interactions with chain F
Hydrogen bonds:
F:R.93
,
F:A.94
,
F:R.202
,
F:R.202
,
F:S.219
Water bridges:
F:S.91
,
F:S.91
Salt bridges:
F:D.205
,
F:H.232
pi-Cation interactions:
F:R.202
C2E.9:
11 residues within 4Å:
Chain F:
N.60
,
I.63
,
S.91
,
L.92
,
R.93
,
D.96
,
N.201
,
R.202
,
T.203
,
H.232
Ligands:
C2E.8
9
PLIP interactions
:
9 interactions with chain F
Hydrogen bonds:
F:R.93
,
F:R.93
,
F:R.93
,
F:N.201
,
F:R.202
,
F:T.203
Salt bridges:
F:R.93
,
F:D.96
pi-Cation interactions:
F:R.93
2 x
GOL
:
GLYCEROL
(Non-functional Binders)
GOL.7:
5 residues within 4Å:
Chain E:
I.15
,
L.28
,
W.32
,
L.119
,
I.122
3
PLIP interactions
:
3 interactions with chain E
Hydrogen bonds:
E:S.29
,
E:S.29
,
E:L.119
GOL.10:
5 residues within 4Å:
Chain F:
I.15
,
L.28
,
W.32
,
L.119
,
E.123
2
PLIP interactions
:
2 interactions with chain F
Hydrogen bonds:
F:L.119
,
F:E.123
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Abidi, W. et al., Architecture and regulation of an enterobacterial cellulose secretion system. Sci Adv (2021)
Release Date
2021-02-24
Peptides
Bacterial cellulose secretion regulator BcsQ, R156E mutant:
A
B
Bacterial cellulose secretion regulator BcsR:
C
D
Bacterial cellulose secretion regulator BcsE, residues 217-523:
E
F
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
C
C
D
D
E
E
F
F
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Bacterial cellulose secretion regulator BcsQ, R156E mutant
Toggle Identical (AB)
Bacterial cellulose secretion regulator BcsR
Bacterial cellulose secretion regulator BcsE, residues 217-523
Related Entries With Identical Sequence
6ybu.1
|
6ybu.2
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