SMTL ID : 6yi5.1

In-situ structure of the trimeric HEF from influenza C by flexible fitting into a cryo-ET map.

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-mer

Ligands

6 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 6 residues within 4Å: Chain A: N.12, S.13, S.14, T.28 Chain B: G.22, E.42 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:E.42 NAG-NAG-BMA.2: 4 residues within 4Å: Chain A: K.40, Y.369, W.379, N.381 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.4: 7 residues within 4Å: Chain C: N.12, S.13, S.14, T.28 Chain D: G.22, G.23, E.42 1 PLIP interactions: 1 interactions with chain D Hydrophobic interactions: D:E.42 NAG-NAG-BMA.5: 4 residues within 4Å: Chain C: K.40, Y.369, W.379, N.381 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.7: 7 residues within 4Å: Chain E: N.12, S.13, S.14, T.28, L.415 Chain F: G.22, E.42 1 PLIP interactions: 1 interactions with chain F Hydrophobic interactions: F:E.42 NAG-NAG-BMA.8: 4 residues within 4Å: Chain E: K.40, Y.369, W.379, N.381 No protein-ligand interaction detected (PLIP)

3 x NAG- NDG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NDG-BMA.3: 8 residues within 4Å: Chain B: I.54, S.58, I.61, N.106 Chain E: N.19, G.20, F.21, N.24 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain E Hydrogen bonds: B:S.57, B:S.57, E:N.19, E:N.19, E:G.20, E:N.24, B:S.58, E:N.24 Hydrophobic interactions: E:F.21, B:I.61 NAG-NDG-BMA.6: 6 residues within 4Å: Chain A: N.19, G.20, F.21 Chain D: S.58, I.61, N.106 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain D Hydrophobic interactions: A:F.21 Hydrogen bonds: A:N.19, A:G.20, A:N.24, D:S.58 NAG-NDG-BMA.9: 8 residues within 4Å: Chain C: N.19, G.20, F.21, N.24 Chain F: I.54, S.58, I.61, N.106 6 PLIP interactions: 2 interactions with chain F, 4 interactions with chain C Hydrogen bonds: F:S.57, F:S.57, C:N.19, C:G.20, C:N.24, F:S.58, F:N.106, F:S.58 Hydrophobic interactions: C:F.21, F:I.61

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Halldorsson, S. et al., In situ structure and organization of the influenza C virus surface glycoprotein. Nat Commun (2021)

Release Date

2021-03-24

Peptides

Hemagglutinin-esterase-fusion glycoprotein: ACE
Hemagglutinin-esterase-fusion glycoprotein: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
E

E
C

B
B

D
F

F
D

Hemagglutinin-esterase-fusion glycoprotein

Hemagglutinin-esterase-fusion glycoprotein

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