SMTL ID : 6yp7.1

PSII-LHCII C2S2 supercomplex from Pisum sativum grown in high light conditions

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-6-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-mer
Ligands
48 x CHL: CHLOROPHYLL B(Non-covalent)(Covalent)
150 x CLA: CHLOROPHYLL A(Non-covalent)(Covalent)
12 x LUT: (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL(Non-covalent)
8 x XAT: (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL(Non-covalent)
7 x NEX: (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL(Non-covalent)
26 x LHG: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE(Non-covalent)(Covalent)
2 x OEX: CA-MN4-O5 CLUSTER(Non-covalent)
2 x FE2: FE (II) ION(Non-covalent)
4 x CL: CHLORIDE ION(Non-functional Binders)
4 x PHO: PHEOPHYTIN A(Non-covalent)
22 x BCR: BETA-CAROTENE(Non-covalent)
4 x PL9: 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE(Non-covalent)
8 x SQD: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL(Non-covalent)(Covalent)
2 x BCT: BICARBONATE ION(Non-functional Binders)
10 x DGD: DIGALACTOSYL DIACYL GLYCEROL (DGDG)(Non-covalent)
14 x LMG: 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE(Non-covalent)
2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Grinzato, A. et al., High-Light versus Low-Light: Effects on Paired Photosystem II Supercomplex Structural Rearrangement in Pea Plants. Int J Mol Sci (2020)
Release Date
2020-11-25
Peptides
Chlorophyll a-b binding protein 8, chloroplastic: ABCDEF
Photosystem II protein D1: GX
Photosystem II CP47 reaction center protein: HY
Photosystem II CP43 reaction center protein: IZ
Photosystem II D2 protein: J0
Cytochrome b559 subunit alpha: K1
Cytochrome b559 subunit beta: L2
Photosystem II reaction center protein H: M3
Photosystem II reaction center protein I: N4
Photosystem II reaction center protein J: O5
Photosystem II reaction center protein K: P6
Photosystem II reaction center protein L: Q7
Photosystem II reaction center protein M: R8
Oxygen-evolving enhancer protein 1, chloroplastic: S9
Photosystem II reaction center protein T: Ta
Photosystem II reaction center protein W: Ub
Ultraviolet-B-repressible protein: Vc
Photosystem II reaction center protein Z: Wd
Light harvesting chlorophyll a/b-binding protein Lhcb4.3: eh
Light harvesting chlorophyll a/b-binding protein Lhcb5, CP26: fg
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
g
B
n
C
y
D
G
E
N
F
Y
G
a
X
A
H
b
Y
B
I
c
Z
C
J
d
0
D
K
e
1
E
L
f
2
F
M
h
3
H
N
i
4
I
O
j
5
J
P
k
6
K
Q
l
7
L
R
m
8
M
S
o
9
O
T
t
a
T
U
w
b
W
V
x
c
X
W
z
d
Z
e
r
h
R
f
s
g
S
Membrane
We predict this structure to be a membrane protein.

Chlorophyll a-b binding protein 8, chloroplastic

Toggle Identical (ABCDEF)

Photosystem II protein D1

Toggle Identical (GX)

Photosystem II CP47 reaction center protein

Toggle Identical (HY)

Photosystem II CP43 reaction center protein

Toggle Identical (IZ)

Photosystem II D2 protein

Toggle Identical (J0)

Cytochrome b559 subunit alpha

Toggle Identical (K1)

Cytochrome b559 subunit beta

Toggle Identical (L2)

Photosystem II reaction center protein H

Toggle Identical (M3)

Photosystem II reaction center protein I

Toggle Identical (N4)

Photosystem II reaction center protein J

Toggle Identical (O5)

Photosystem II reaction center protein K

Toggle Identical (P6)

Photosystem II reaction center protein L

Toggle Identical (Q7)

Photosystem II reaction center protein M

Toggle Identical (R8)

Oxygen-evolving enhancer protein 1, chloroplastic

Toggle Identical (S9)

Photosystem II reaction center protein T

Toggle Identical (Ta)

Photosystem II reaction center protein W

Toggle Identical (Ub)

Ultraviolet-B-repressible protein

Toggle Identical (Vc)

Photosystem II reaction center protein Z

Toggle Identical (Wd)

Light harvesting chlorophyll a/b-binding protein Lhcb4.3

Toggle Identical (eh)

Light harvesting chlorophyll a/b-binding protein Lhcb5, CP26

Toggle Identical (fg)

Related Entries With Identical Sequence

5xnl.1 | 5xnm.1