SMTL ID : 6yq7.1 (1 other biounit)

Taka-amylase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.58 Å

Oligo State

monomer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 5 residues within 4Å: Chain A: Y.109, W.211, S.214, L.215, N.218 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.215 Hydrogen bonds: A:S.214, A:N.218 Water bridges: A:Y.219

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain A: K.284, S.285, T.286, T.326, L.331 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.286 EDO.3: 4 residues within 4Å: Chain A: H.101, Y.103, D.361, R.365 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.361, A:R.365, A:R.365 Water bridges: A:Q.56, A:H.317

1 x CA: CALCIUM ION(Non-covalent)

CA.4: 4 residues within 4Å: Chain A: N.142, E.183, D.196, H.231 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.183, A:D.196, A:H.231, H2O.5, H2O.7

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, Y. et al., Activity-Based Protein Profiling of Retaining alpha-Amylases in Complex Biological Samples. J.Am.Chem.Soc. (2021)

Release Date

2020-06-10

Peptides

Alpha-amylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Alpha-amylase

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