SMTL ID : 6ywv.1

The structure of the Atp25 bound assembly intermediate of the mitoribosome from Neurospora crassa

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
Ligands
144 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)
1 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
1 x SPM: SPERMINE(Non-covalent)
23 x K: POTASSIUM ION(Non-functional Binders)(Non-covalent)
2 x ZN: ZINC ION(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Itoh, Y. et al., Analysis of translating mitoribosome reveals functional characteristics of translation in mitochondria of fungi. Nat Commun (2020)
Release Date
2020-11-11
Peptides
60S ribosomal protein L2: B
60S ribosomal protein L3: C
60S ribosomal protein L4, variant: D
50S ribosomal protein L5: E
60S ribosomal protein L6: F
Uncharacterized protein: G
60S ribosomal protein L19: H
Ribosomal protein L13: I
50S ribosomal protein L14: J
50S ribosomal subunit protein L15: K
60S ribosomal protein L16: L
50S ribosomal protein L17: M
Mitochondrial ribosomal protein: N
Aconitate hydratase: O
Mitochondrial large ribosomal subunit: P
Mitochondrial ribosomal protein subunit L23: Q
KOW domain-containing protein: R
Uncharacterized protein: S
50S ribosomal protein L24: T
54S ribosomal protein L4, mitochondrial: U
50S ribosomal protein L30: V
Uncharacterized protein: W
Mitochondrial ribosomal protein subunit L32: X
Uncharacterized protein: Y
Uncharacterized protein: Z
Ribosomal protein: 0
Mitochondrial large ribosomal subunit YmL35: 1
Uncharacterized protein: 2
Uncharacterized protein: 3
Mitochondrial ribosomal protein L43: 4
60S ribosomal protein L3: 5
50S ribosomal subunit L30: 6
Uncharacterized protein: 7
Uncharacterized protein: 8
Mitochondrial ribosomal protein L44: 9
Uncharacterized protein: a
RNase III domain-containing protein: b
60S ribosomal protein L20: c
Mitochondrial 60S ribosomal protein L25: d
54S ribosomal protein L31, mitochondrial: e
Uncharacterized protein: f
ATPase synthesis protein 25, mitochondrial: g
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
B
B
C
C
D
D
E
E
F
F
G
f
H
g
I
H
J
I
K
J
L
K
M
L
N
M
O
N
P
O
Q
P
R
Q
S
R
T
S
U
T
V
U
W
V
X
W
Y
X
Z
Y
0
0
1
1
2
2
3
3
4
4
5
5
6
6
7
7
8
8
9
h
a
i
b
9
c
a
d
b
e
c
f
d
g
n

60S ribosomal protein L2

60S ribosomal protein L3

60S ribosomal protein L4, variant

50S ribosomal protein L5

60S ribosomal protein L6

Uncharacterized protein

60S ribosomal protein L19

Ribosomal protein L13

50S ribosomal protein L14

50S ribosomal subunit protein L15

60S ribosomal protein L16

50S ribosomal protein L17

Mitochondrial ribosomal protein

Aconitate hydratase

Mitochondrial large ribosomal subunit

Mitochondrial ribosomal protein subunit L23

KOW domain-containing protein

Uncharacterized protein

50S ribosomal protein L24

54S ribosomal protein L4, mitochondrial

50S ribosomal protein L30

Uncharacterized protein

Mitochondrial ribosomal protein subunit L32

Uncharacterized protein

Uncharacterized protein

Ribosomal protein

Mitochondrial large ribosomal subunit YmL35

Uncharacterized protein

Uncharacterized protein

Mitochondrial ribosomal protein L43

60S ribosomal protein L3

50S ribosomal subunit L30

Uncharacterized protein

Uncharacterized protein

Mitochondrial ribosomal protein L44

Uncharacterized protein

RNase III domain-containing protein

60S ribosomal protein L20

Mitochondrial 60S ribosomal protein L25

54S ribosomal protein L31, mitochondrial

Uncharacterized protein

ATPase synthesis protein 25, mitochondrial

Related Entries With Identical Sequence

6yw5.1 | 6ywe.2 | 6ywe.3 | 6ywe.4 | 6ywe.5 | 6ywe.6 | 6ywe.8 | 6ywe.9 | 6ywe.10 | 6ywe.11 | 6ywe.12 | 6ywe.13 | 6ywe.14 | 6ywe.15 | 6ywe.16 | 6ywe.17 | 6ywe.18 | 6ywe.19 | 6ywe.20 | 6ywe.21 | 6ywe.22 | 6ywe.23 | 6ywe.24 | 6ywe.25 | 6ywe.26 | 6ywe.27 | 6ywe.28 | 6ywe.29 | 6ywe.30 | 6ywe.31  more...