SMTL ID : 6z1b.1

Structure of K52-acetylated RutR in complex with uracil.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

homo-dimer

Ligands

2 x URA: URACIL(Non-covalent)

URA.1: 12 residues within 4Å: Chain A: L.76, W.79, L.80, Y.99, K.103, F.117, L.136, W.169, Q.173 Chain B: H.174, F.178, Q.181 11 PLIP interactions: 9 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:L.76, A:W.79, A:L.80 Hydrogen bonds: A:K.103, A:Q.173, A:Q.173, B:Q.181, B:Q.181 Water bridges: A:W.169 pi-Stacking: A:W.169, A:W.169 URA.5: 11 residues within 4Å: Chain A: F.178, Q.181 Chain B: L.76, W.79, L.80, Y.99, K.103, F.117, L.136, W.169, Q.173 10 PLIP interactions: 8 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:W.79, B:L.80 Hydrogen bonds: B:K.103, B:Q.173, B:Q.173, A:Q.181, A:Q.181 Water bridges: B:W.169 pi-Stacking: B:W.169, B:W.169

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain A: A.20, K.21, A.24, A.50, G.51, V.52 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.50 EDO.3: 8 residues within 4Å: Chain A: F.38, H.39, Y.68, M.119, E.120, A.123, P.126, L.127 No protein-ligand interaction detected (PLIP) EDO.4: 4 residues within 4Å: Chain A: V.18, K.22, Y.59, Y.60 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.59

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kremer, M. et al., Structure of K52-acetylated RutR in complex with uracil. To Be Published

Release Date

2022-06-01

Peptides

HTH-type transcriptional regulator RutR: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

HTH-type transcriptional regulator RutR