SMTL ID : 6zep.1

Flavourzyme Leucine Aminopeptidase A proenzyme

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.61 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- BMA- MAN- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN.1: 2 residues within 4Å: Chain A: N.87, Q.91 No protein-ligand interaction detected (PLIP)

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 6 residues within 4Å: Chain A: H.176, D.195, E.233, D.261 Ligands: ZN.3, CL.4 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.176, A:D.195, A:D.261, H2O.8, H2O.12 ZN.3: 6 residues within 4Å: Chain A: R.50, D.195, E.234, H.343 Ligands: ZN.2, CL.4 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.195, A:E.234, A:E.234, A:H.343, H2O.8

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 5 residues within 4Å: Chain A: D.195, I.342, H.343 Ligands: ZN.2, ZN.3 Ligand excluded by PLIP

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 4 residues within 4Å: Chain A: P.108, E.111, F.112, W.128 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:W.128

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Baltulionis, G. et al., The role of propeptide-mediated autoinhibition and intermolecular chaperone in the maturation of cognate catalytic domain in leucine aminopeptidase. J.Struct.Biol. (2021)

Release Date

2021-06-16

Peptides

Leucine aminopeptidase A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Leucine aminopeptidase A

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