SMTL ID : 6zer.3 (2 other biounits)

Crystal structure of receptor binding domain of SARS-CoV-2 Spike glycoprotein in complex with EY6A Fab

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.80 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: G.10, N.14, V.38 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:V.38

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 2 residues within 4Å: Chain B: T.115, L.116 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.115, B:L.116 PO4.3: 2 residues within 4Å: Chain C: K.191, R.212 2 PLIP interactions: 2 interactions with chain C Salt bridges: C:K.191, C:R.212

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhou, D. et al., Structural basis for the neutralization of SARS-CoV-2 by an antibody from a convalescent patient. Nat.Struct.Mol.Biol. (2020)

Release Date

2020-06-24

Peptides

Spike protein S1: A
EY6A heavy chain: B
EY6A light chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
F

C
G

Spike protein S1

EY6A heavy chain

EY6A light chain

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