SMTL ID : 6zks.1

Deactive complex I, open1

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-2-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
Ligands
6 x SF4: IRON/SULFUR CLUSTER(Non-covalent)(Covalent)
1 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)
2 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
1 x K: POTASSIUM ION(Non-covalent)
6 x PC1: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)
8 x 3PE: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE(Non-covalent)
6 x CDL: CARDIOLIPIN(Non-covalent)
2 x ZMP: S-[2-({N-[(2S)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] tetradecanethioate(Covalent)(Non-covalent)
1 x ZN: ZINC ION(Non-covalent)
1 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
1 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)
1 x MYR: MYRISTIC ACID(Covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Kampjut, D. et al., The coupling mechanism of mammalian respiratory complex I. Science (2020)
Release Date
2020-10-07
Peptides
NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial: A
Uncharacterized protein: B
NADH:ubiquinone oxidoreductase core subunit S1: C
Mitochondrial complex I, 49 kDa subunit: D
NADH:ubiquinone oxidoreductase core subunit S3: E
Mitochondrial complex I, PSST subunit: F
Mitochondrial complex I, TYKY subunit: G
NADH-ubiquinone oxidoreductase chain 3: H
NADH-ubiquinone oxidoreductase chain 1: I
NADH-ubiquinone oxidoreductase chain 6: J
NADH-ubiquinone oxidoreductase chain 4L: K
NADH-ubiquinone oxidoreductase chain 5: L
NADH-ubiquinone oxidoreductase chain 4: M
NADH-ubiquinone oxidoreductase chain 2: N
Uncharacterized protein: O
NADH:ubiquinone oxidoreductase subunit B5: P
Acyl carrier protein: Q2
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8: R
Mitochondrial complex I, PDSW subunit: S
Mitochondrial complex I, 10 kDa subunit: T
Mitochondrial complex I, 13 kDa subunit: U
NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial: V
NADH:ubiquinone oxidoreductase subunit A9: W
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2: X
Uncharacterized protein: Y
NADH:ubiquinone oxidoreductase subunit A6: Z
Uncharacterized protein: 0
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12: 1
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial: 3
NADH:ubiquinone oxidoreductase subunit S5: 4
NADH:ubiquinone oxidoreductase subunit A3: 5
NADH:ubiquinone oxidoreductase subunit B3: 6
NADH dehydrogenase [ubiquinone] 1 subunit C2: 7
NADH:ubiquinone oxidoreductase subunit B4: 8
Mitochondrial complex I, B16.6 subunit: 9
Uncharacterized protein: a
NADH:ubiquinone oxidoreductase subunit B7: b
NADH:ubiquinone oxidoreductase subunit B9: c
NADH:ubiquinone oxidoreductase subunit B2: d
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial: e
Uncharacterized protein: f
Mitochondrial complex I, KFYI subunit: g
Mitochondrial complex I, MNLL subunit: h
Mitochondrial complex I, MWFE subunit: i
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
1
B
2
C
3
D
4
E
5
F
6
G
9
H
A
I
H
J
J
K
K
L
L
M
M
N
N
O
V
P
W
Q
X
2
j
R
Y
S
Z
T
a
U
b
V
c
W
d
X
e
Y
f
Z
g
0
h
1
i
3
k
4
l
5
m
6
n
7
o
8
p
9
q
a
r
b
s
c
t
d
u
e
v
f
w
g
x
h
y
i
z
Membrane
We predict this structure to be a membrane protein.

NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial

Uncharacterized protein

NADH:ubiquinone oxidoreductase core subunit S1

Mitochondrial complex I, 49 kDa subunit

NADH:ubiquinone oxidoreductase core subunit S3

Mitochondrial complex I, PSST subunit

Mitochondrial complex I, TYKY subunit

NADH-ubiquinone oxidoreductase chain 3

NADH-ubiquinone oxidoreductase chain 1

NADH-ubiquinone oxidoreductase chain 6

NADH-ubiquinone oxidoreductase chain 4L

NADH-ubiquinone oxidoreductase chain 5

NADH-ubiquinone oxidoreductase chain 4

NADH-ubiquinone oxidoreductase chain 2

Uncharacterized protein

NADH:ubiquinone oxidoreductase subunit B5

Acyl carrier protein

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8

Mitochondrial complex I, PDSW subunit

Mitochondrial complex I, 10 kDa subunit

Mitochondrial complex I, 13 kDa subunit

NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial

NADH:ubiquinone oxidoreductase subunit A9

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2

Uncharacterized protein

NADH:ubiquinone oxidoreductase subunit A6

Uncharacterized protein

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial

NADH:ubiquinone oxidoreductase subunit S5

NADH:ubiquinone oxidoreductase subunit A3

NADH:ubiquinone oxidoreductase subunit B3

NADH dehydrogenase [ubiquinone] 1 subunit C2

NADH:ubiquinone oxidoreductase subunit B4

Mitochondrial complex I, B16.6 subunit

Uncharacterized protein

NADH:ubiquinone oxidoreductase subunit B7

NADH:ubiquinone oxidoreductase subunit B9

NADH:ubiquinone oxidoreductase subunit B2

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial

Uncharacterized protein

Mitochondrial complex I, KFYI subunit

Mitochondrial complex I, MNLL subunit

Mitochondrial complex I, MWFE subunit

Related Entries With Identical Sequence

5ldw.1 | 5ldx.1 | 5lnk.1 | 5o31.1 | 6q9b.1 | 6q9d.1 | 6qa9.1 | 6qbx.36 | 6qbx.39 | 6qbx.40 | 6qbx.41 | 6qbx.42 | 6qbx.43 | 6qbx.44 | 6qbx.45 | 6qbx.50 | 6qbx.65 | 6qc2.1 | 6qc2.2 | 6qc2.3 | 6qc2.4 | 6qc2.5 | 6qc2.6 | 6qc2.7 | 6qc2.12 | 6qc2.28 | 6qc2.64 | 6qc3.36 | 6qc3.38 | 6qc3.39  more...