SMTL ID : 6zn7.1

MaeB malic enzyme domain apoprotein

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.67 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: E.160, D.161, D.186 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.160, A:D.161, A:D.186, H2O.4, H2O.6 MG.3: 3 residues within 4Å: Chain B: E.160, D.161, D.186 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.161, B:D.186, B:D.186, H2O.7, H2O.17

2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.2: 19 residues within 4Å: Chain A: T.190, N.217, G.218, A.219, G.220, A.221, S.222, D.244, S.245, K.261, L.286, S.287, V.288, M.309, A.310, N.311, G.333, V.341, N.343 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:N.217, A:A.219, A:A.219, A:A.221, A:S.222, A:S.245, A:S.245, A:S.245, A:S.287, A:N.311, A:N.311, A:V.341 Water bridges: A:A.219, A:G.220, A:A.223, A:G.247, A:N.343 Salt bridges: A:K.261 NAP.4: 19 residues within 4Å: Chain B: T.190, N.217, G.218, A.219, G.220, A.221, S.222, D.244, S.245, K.261, L.286, S.287, V.288, M.309, A.310, N.311, G.333, V.341, N.343 19 PLIP interactions: 19 interactions with chain B Hydrophobic interactions: B:T.190 Hydrogen bonds: B:N.217, B:A.219, B:A.219, B:A.221, B:S.222, B:S.222, B:D.244, B:S.245, B:S.245, B:S.287, B:N.311, B:N.311, B:V.341 Water bridges: B:G.220, B:A.223, B:A.291, B:N.343 Salt bridges: B:K.261

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Harding, C.J. et al., A rotary mechanism for allostery in bacterial hybrid malic enzymes. Nat Commun (2021)

Release Date

2021-02-17

Peptides

NADP-dependent malate dehydrogenase,Malate dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

NADP-dependent malate dehydrogenase,Malate dehydrogenase

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