SMTL ID : 6zzx.1

Structure of low-light grown Chlorella ohadii Photosystem I

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-2-1-1-1-1-1-1-1-1-mer
Ligands
1 x CL0: CHLOROPHYLL A ISOMER(Non-covalent)
208 x CLA: CHLOROPHYLL A(Non-covalent)
47 x CHL: CHLOROPHYLL B(Non-covalent)
2 x PQN: PHYLLOQUINONE(Non-covalent)
3 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
32 x BCR: BETA-CAROTENE(Non-covalent)
24 x LHG: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE(Non-covalent)
1 x LMG: 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE(Non-covalent)
5 x SQD: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL(Non-covalent)
11 x PTY: PHOSPHATIDYLETHANOLAMINE(Non-covalent)
1 x 3PH: 1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE(Non-covalent)
4 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)
4 x DGD: DIGALACTOSYL DIACYL GLYCEROL (DGDG)(Non-covalent)
4 x PCW: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)
1 x LPX: (2S)-3-{[(R)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-hydroxypropyl hexadecanoate(Non-covalent)
1 x NEX: (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL(Non-covalent)
2 x RRX: (3R)-beta,beta-caroten-3-ol(Non-covalent)
4 x SPH: SPHINGOSINE(Non-functional Binders)(Non-covalent)
1 x ECH: beta,beta-caroten-4-one(Non-covalent)
21 x LUT: (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL(Non-covalent)
2 x AXT: ASTAXANTHIN(Non-covalent)
4 x OLA: OLEIC ACID(Non-covalent)(Non-functional Binders)
1 x QTB: (3~{E},5~{E},7~{E})-6-methyl-8-[(6~{R})-2,2,6-trimethylcyclohexyl]octa-3,5,7-trien-2-one(Non-covalent)
7 x PLM: PALMITIC ACID(Non-covalent)
4 x DGA: DIACYL GLYCEROL(Non-covalent)
1 x 13X: benzene-1,3,5-triol(Non-covalent)
4 x XAT: (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL(Non-covalent)
1 x 4RF: Tripalmitoylglycerol(Non-covalent)
1 x P5S: O-[(R)-{[(2R)-2,3-bis(octadecanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-L-serine(Non-functional Binders)
1 x LAP: [2-((1-OXODODECANOXY-(2-HYDROXY-3-PROPANYL))-PHOSPHONATE-OXY)-ETHYL]-TRIMETHYLAMMONIUM(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Caspy, I. et al., Cryo-EM photosystem I structure reveals adaptation mechanisms to extreme high light in Chlorella ohadii. Nat.Plants (2021)
Release Date
2021-07-28
Peptides
Photosystem I P700 chlorophyll a apoprotein A1: A
Photosystem I P700 chlorophyll a apoprotein A2: B
Photosystem I iron-sulfur center: C
Photosystem I reaction center subunit chloroplastic: D
Photosystem I reaction center subunit IV: E
PSI-F: F
Photosystem I reaction center subunit chloroplastic: G
Photosystem I reaction center subunit VI-chloroplastic-like: H
Photosystem I reaction center subunit IX: I
Photosystem I reaction center subunit chloroplastic: J
Photosystem I reaction center subunit XI: K
Photosystem I reaction center subunit XII: L
Photosystem I reaction center subunit VIII: M
Photosystem I subunit O: N
Chlorophyll a-b binding protein, chloroplastic: OP
Glutathione reductase: Q
Lhca4: R
Chlorophyll a-b binding protein, chloroplastic: S
Chlorophyll a-b binding protein, chloroplastic: T
Lhca7: U
Chlorophyll a-b binding protein, chloroplastic: V
Chlorophyll a-b binding protein, chloroplastic: W
Chlorophyll a-b binding protein, chloroplastic: X
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
C
C
D
D
E
E
F
F
G
G
H
H
I
J
J
K
K
L
L
M
M
I
N
O
O
1
P
a
Q
3
R
4
S
5
T
6
U
7
V
8
W
2
X
9
Membrane
We predict this structure to be a membrane protein.

Photosystem I P700 chlorophyll a apoprotein A1

Photosystem I P700 chlorophyll a apoprotein A2

Photosystem I iron-sulfur center

Photosystem I reaction center subunit chloroplastic

Photosystem I reaction center subunit IV

PSI-F

Photosystem I reaction center subunit chloroplastic

Photosystem I reaction center subunit VI-chloroplastic-like

Photosystem I reaction center subunit IX

Photosystem I reaction center subunit chloroplastic

Photosystem I reaction center subunit XI

Photosystem I reaction center subunit XII

Photosystem I reaction center subunit VIII

Photosystem I subunit O

Chlorophyll a-b binding protein, chloroplastic

Toggle Identical (OP)

Glutathione reductase

Lhca4

Chlorophyll a-b binding protein, chloroplastic

Chlorophyll a-b binding protein, chloroplastic

Lhca7

Chlorophyll a-b binding protein, chloroplastic

Chlorophyll a-b binding protein, chloroplastic

Chlorophyll a-b binding protein, chloroplastic

Related Entries With Identical Sequence

6zzy.1 | 7a4p.1