SMTL ID : 7a1a.1

2,3-Dihydroxybenzoate Decarboxylase of Aspergillus oryzae

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.53 Å

Oligo State

homo-tetramer

Ligands

4 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: E.28, H.187, D.313 6 PLIP interactions: 3 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.28, A:H.187, A:D.313, H2O.6, H2O.6, H2O.9 MG.2: 3 residues within 4Å: Chain B: E.28, H.187, D.313 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:H.187, B:D.313, H2O.22, H2O.23, H2O.24 MG.4: 3 residues within 4Å: Chain C: E.28, H.187, D.313 6 PLIP interactions: 3 interactions with chain C, 3 Ligand-Water interactions Metal complexes: C:E.28, C:H.187, C:D.313, H2O.34, H2O.34, H2O.36 MG.5: 3 residues within 4Å: Chain D: E.28, H.187, D.313 5 PLIP interactions: 2 interactions with chain D, 3 Ligand-Water interactions Metal complexes: D:H.187, D:D.313, H2O.50, H2O.50, H2O.52

2 x CA: CALCIUM ION(Non-covalent)

CA.3: 2 residues within 4Å: Chain B: E.37, R.41 5 PLIP interactions: 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:E.37, H2O.24, H2O.24, H2O.25, H2O.25 CA.6: 2 residues within 4Å: Chain D: E.37, R.41 5 PLIP interactions: 1 interactions with chain D, 4 Ligand-Water interactions Metal complexes: D:E.37, H2O.51, H2O.52, H2O.52, H2O.52

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hofer, G. et al., Metal Ion Promiscuity and Structure of 2,3-Dihydroxybenzoic Acid Decarboxylase of Aspergillus oryzae. Chembiochem (2021)

Release Date

2020-10-21

Peptides

Amidohydrolase 2: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Amidohydrolase 2

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